PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P12650_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 160aa    MW: 17859.2 Da    PI: 6.2814
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P12650_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-17857255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            +y+GVr +k +g+Wv+eIr+p   gk++r++lg+f +ae+Aa a++ a ++l+g
  GSMUA_Achr11P12650_001  8 HYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFESAEMAAVAHDVAELRLRG 57
                            7*****999.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.00E-30867No hitNo description
SuperFamilySSF541718.5E-22867IPR016177DNA-binding domain
SMARTSM003806.9E-37871IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-31867IPR001471AP2/ERF domain
PfamPF008472.5E-11857IPR001471AP2/ERF domain
PROSITE profilePS5103223.354865IPR001471AP2/ERF domain
PRINTSPR003675.0E-10920IPR001471AP2/ERF domain
PRINTSPR003675.0E-103147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MRADGGVHYR GVRKRKWGKW VSEIREPGKK TRIWLGSFES AEMAAVAHDV AELRLRGRDA  60
QLNFPESVDQ LPRPRSSDPQ DIRSAALDAA ARLRCRTVAT ARAGIAPALE RLGNDELGLD  120
SPKMWLELAE ALLLSPPVWS SEASEVEEWE PHGSLWDPLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-19669367ATERF1
3gcc_A3e-19669367ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0965691e-50FP096569.1 Phyllostachys edulis cDNA clone: bphyem127p14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383447.21e-111PREDICTED: ethylene-responsive transcription factor ERF022-like
SwissprotQ9C9I28e-37ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLM0RRP51e-109M0RRP5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P12650_0011e-110(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.14e-35ERF family protein