PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P10790_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 296aa MW: 32021 Da PI: 7.1764

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P10790_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.8	6.5e-40	27	88	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprC stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss GSMUA_Achr11P10790_001 27 PEQALKCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTQGGSLRNVPVGGGCRKNKRSSS 88 6899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-28	18	85	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-33	29	85	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.255	31	85	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	33	69	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005730	Cellular Component	nucleolus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MARHHVDGLL VCPKNQLEQE RRPRPHPEQA LKCPRCASTN TKFCYYNNYS LSQPRYFCKG 60 CRRYWTQGGS LRNVPVGGGC RKNKRSSSSF PSKMTQDLDL TATSSINPLP PTFVPPPLAS 120 DLTLAFSGLH KEPPTEHLGL ENHCQSFLLE HASTESLLTT LSTNNGFLDT LRSGSVDALN 180 PSGLNNPYYG FGVHGSVEVK VGVSVEDRLM FPVGGPGDAA ARTVTGQGSW KDMDEGEAKV 240 LMGLPWQVEG DGNMAVDSGR DWTGGASSWP GLMGSSLISA ARTDMSSTIG DAYAFF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM366546	5e-51	HM366546.1 Prunus persica clone PpDOF1 Dof-type zinc finger domain-containing protein mRNA, complete cds.
GenBank	HM366547	5e-51	HM366547.1 Prunus persica clone PpDOF2 Dof-type zinc finger domain-containing protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009383306.1	0.0	PREDICTED: dof zinc finger protein DOF5.3-like isoform X1
TrEMBL	M0RR59	0.0	M0RR59_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P10790_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4704	32	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	3e-39	TARGET OF MONOPTEROS 6