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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P10010_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 647aa MW: 69727.9 Da PI: 5.1468 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.8 | 1.7e-31 | 282 | 339 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y++ Hnh+k GSMUA_Achr11P10010_001 282 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIVYKSAHNHPK 339 8****************************************.***************85 PP | |||||||
2 | WRKY | 103 | 1.6e-32 | 496 | 554 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k++er+++d k v++tYeg+Hnh+ GSMUA_Achr11P10010_001 496 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCMVRKHIERASHDLKSVITTYEGKHNHD 554 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.4E-28 | 278 | 340 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.75E-25 | 279 | 340 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.7E-35 | 281 | 339 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.837 | 282 | 340 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-24 | 282 | 338 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.5E-36 | 481 | 556 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-28 | 488 | 556 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.929 | 491 | 556 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.5E-38 | 496 | 555 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-24 | 497 | 554 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 647 aa Download sequence Send to blast |
MAGTEDNSST IEYWPPPNSG SRTLSNSSND EFGSKSLSIF LAENGNVGPS WKSETQSMGP 60 STKAEEGEAD VNDSNEFSLQ SKLFGAPISS SSGGLAERMA ARKGFNVPKL DTAGIPPASM 120 ASHSDIHSPY LTIPPGLSPT MLLESPVFLA DPMAQLSPTT GKFQFGENVA SNPILVSDSS 180 DPTKSEDDLF EDIPEAFAFK PPPESHLNLS SSETKVMLLA LLTLQQQELP SMEVSTGPEK 240 PTQSRSIEAG MASHHSPAVD DQEDGDADLR GELSTTVGTP AEDGYNWRKY GQKQVKGSEY 300 PRSYYKCTHP NCQVKKKVER SHEGHITEIV YKSAHNHPKP HVNRRSGVPS SHPFNDPQIN 360 ESEQPGSQTS FDGKPVKGSS QSGNGGQEWL GDGLEATSSA PVAAECCDTS NALQRIQDGT 420 RLSPDVVGVS STLSNDEEED DRATHGSVSL GCDGEGDETE SKRRKLDACA IEMSAASRAV 480 REPRVVVQTT SEIDILDDGY RWRKYGQKVV KGNPNPRSYY KCTNPGCMVR KHIERASHDL 540 KSVITTYEGK HNHDVPAARS NSHINSAPSN TAPISAPQPH ILQQRPEPTQ DCFVRFDGHT 600 ALNAFNFPGR EQLGSTTSFP FALGQPGLTN LAMAGLGPMA AMKMSDI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-37 | 282 | 557 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-37 | 282 | 557 | 8 | 78 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009383204.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 isoform X1 | ||||
Refseq | XP_018675721.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 isoform X1 | ||||
Refseq | XP_018675722.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 isoform X1 | ||||
Swissprot | Q9FG77 | 1e-142 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | M0RQY1 | 0.0 | M0RQY1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P10010_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2075 | 38 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 1e-141 | WRKY DNA-binding protein 2 |
Publications ? help Back to Top | |||
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