PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P09660_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 256aa    MW: 27838.7 Da    PI: 6.7956
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P09660_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-1990139255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+W+AeIrdp     + +r++lg+f+ta +Aa a+++a+++++g
  GSMUA_Achr11P09660_001  90 HYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFDTAVDAAIAYDEAALRFKG 139
                             7********.**********93....36***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.3E-3289148IPR001471AP2/ERF domain
PROSITE profilePS5103223.57890147IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-2190148IPR016177DNA-binding domain
SMARTSM003808.7E-3690153IPR001471AP2/ERF domain
CDDcd000184.46E-2990148No hitNo description
PfamPF008471.7E-1290139IPR001471AP2/ERF domain
PRINTSPR003678.1E-1191102IPR001471AP2/ERF domain
PRINTSPR003678.1E-11113129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDRRHGKRPL PPDEAAPEEK AGELSCSPLA RADQDASAIV SALAHVIGSC SPVAGVGGGE  60
MRQDVSGSGT GSVENRTQPS EEQGNAGRRH YRGVRQRPWG KWAAEIRDPQ KAARVWLGTF  120
DTAVDAAIAY DEAALRFKGC KAKLNFPERV QGRSDLGFLT HRWQAQPPVQ LPATSYPDLL  180
RYARLLQSRD DDLHNRAVGL HPAGSSFMST SSHTTPTSSL SGSSQELVGF SHHWQLRSSS  240
SSSSWPQVDL QDEDED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2589151467ATERF1
3gcc_A1e-2589151467ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383009.10.0PREDICTED: ethylene-responsive transcription factor ERF113-like
TrEMBLM0RQU60.0M0RQU6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P09660_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.12e-34ERF family protein