PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P07460_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 566aa    MW: 62224.8 Da    PI: 8.9092
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P07460_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-05112134123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C+ C+k F r  nL+ H r H
  GSMUA_Achr11P07460_001 112 FTCEVCNKGFQREQNLQLHRRGH 134
                             89*******************88 PP
2zf-C2H211.70.00082188210123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             +kC +C+k++  +s+ k H + +
  GSMUA_Achr11P07460_001 188 WKCDKCSKRYAVQSDWKAHSKIC 210
                             58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.54E-7111134No hitNo description
Gene3DG3DSA:3.30.160.602.9E-6111134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034112134IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.24112134IPR007087Zinc finger, C2H2
PfamPF121714.4E-5112134IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
SMARTSM00355290153183IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.6E-4176209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.54E-7183208No hitNo description
SMARTSM00355140188208IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MFLGIMEEEH CSDQKPHPPL QQRSSSATPS SSAAVPQKKK KRNLPGKPCK YLNFPSLFDP  60
FSYSLSSNPV FREGSFVLSL SLSLSLSLIC RSYTDAEVIA LSPKTLMATN RFTCEVCNKG  120
FQREQNLQLH RRGHNLPWKL KKKNPDEVRR RVYLCPEPTC AHHDPSRALG DLTGIKKHFC  180
RKHGEKRWKC DKCSKRYAVQ SDWKAHSKIC GTREYRCDCG TLFSRRDSFV THRAFCDALA  240
QENARIPTGA HAIGGQLYPN RGITSHFSSL AQPSNDLLLL RGNSGADHIG ATTSRQPQTY  300
HPSSFYFGGG SNQGFDEDPQ LPQSKPFRGM MQLQDLQTVA DASSSSAAAA VNAFNLGFFS  360
GSGSTNALNS AGGGTEPMTL FAGDLTSNHI NDDANISSLY NSCMQPQISA TSLLQKTTTW  420
SGGNGSSLLR GFGTSYHSYT SGVNDGSRQS SGAHVENHFH DIMNSLASDQ VAGFSGFNPG  480
LGNMGEDGLR SNLSAGGIGG SDRSTRDFLG VDSMIRRNMV GGVQEREQHL GIGMRSMDTE  540
MNLYRQFFFL FFYINRCFCF KFLSAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-33184248367Zinc finger protein JACKDAW
5b3h_F4e-33184248367Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3743081e-131AK374308.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3060C18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382756.10.0PREDICTED: protein indeterminate-domain 12-like
RefseqXP_009382757.10.0PREDICTED: protein indeterminate-domain 12-like
RefseqXP_009382758.10.0PREDICTED: protein indeterminate-domain 12-like
TrEMBLM0RQ760.0M0RQ76_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P07460_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-106indeterminate(ID)-domain 4