PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P05700_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | C2H2 | ||||||||
Protein Properties | Length: 414aa MW: 45114.5 Da PI: 10.3306 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.7 | 2.1e-05 | 79 | 101 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H GSMUA_Achr11P05700_001 79 FVCEICHKGFQRDQNLQLHRRGH 101 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00047 | 155 | 177 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ GSMUA_Achr11P05700_001 155 WKCDKCSKKYAVQSDWKAHSKTC 177 58*****************9998 PP | |||||||
3 | zf-C2H2 | 10.8 | 0.0015 | 185 | 203 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsr++++++H + GSMUA_Achr11P05700_001 185 DCGTIFSRRDSFVTHRAFC 203 8**************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.0E-5 | 78 | 101 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.37E-5 | 78 | 101 | No hit | No description |
SMART | SM00355 | 0.046 | 79 | 101 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.637 | 79 | 101 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 81 | 101 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 290 | 120 | 150 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.4E-4 | 142 | 176 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.37E-5 | 150 | 175 | No hit | No description |
SMART | SM00355 | 150 | 155 | 175 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MSNITGDGGS FSSGTNTGED EVHKQRRLFY GSPAAAANID IAASQLLPVK KKRSLPGTPD 60 PNAEVIALSP TTLMATNRFV CEICHKGFQR DQNLQLHRRG HNLPWKLRQR SSAETRKRVY 120 VCPEPTCVHH HPTRALGDLT GVKKHYCRKH GEKKWKCDKC SKKYAVQSDW KAHSKTCGSR 180 EYKCDCGTIF SRRDSFVTHR AFCDALAQEN HKLSQPLMAT MASSLQGHVP GLTMPVQLTD 240 TDHLMPGYMA GGTLSAFSNP PSTSNVRSPM GLDGLIEAQM SRPMAHVSAT APCIPFKAHE 300 LSYQMVGVGG ARSGDQFWDA DGSLKHTVDF LGVRGERRLH CARRRSPLVR RVGFHGSPSA 360 AAAAAAIAPP RSVLVVAAEG GGQRGGAVAS APLLQPGPRL LRRWHRQGLP DLQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-34 | 151 | 214 | 3 | 66 | Zinc finger protein JACKDAW |
5b3h_F | 3e-34 | 151 | 214 | 3 | 66 | Zinc finger protein JACKDAW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009382551.1 | 0.0 | PREDICTED: protein indeterminate-domain 12-like | ||||
TrEMBL | M0RPQ0 | 0.0 | M0RPQ0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P05700_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 3e-99 | C2H2 family protein |