PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P03040_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 334aa    MW: 38448.5 Da    PI: 5.7485
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P03040_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1721.8e-5351301125
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWk 84 
                             +ppGfrFhPtdeelv +yLkkkv+++k++l +vi+++d+y++ePwdL++  ++   e++ewyfFs++dkky+tg+r+nrat +g+Wk
  GSMUA_Achr11P03040_001   5 VPPGFRFHPTDEELVGYYLKKKVASQKIDL-DVIRDIDLYRIEPWDLQErcRIGYeEQSEWYFFSHKDKKYPTGTRTNRATMAGFWK 90 
                             69****************************.9***************953433332566**************************** PP

                     NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmhe 125
                             atg+dk+v++ k++l+g++ktLvfykgrap+g+ktdW+mhe
  GSMUA_Achr11P03040_001  91 ATGRDKAVHD-KNKLIGMRKTLVFYKGRAPNGQKTDWIMHE 130
                             **********.999**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.24E-543159IPR003441NAC domain
PROSITE profilePS5100554.8675159IPR003441NAC domain
PfamPF023656.1E-276130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MESCVPPGFR FHPTDEELVG YYLKKKVASQ KIDLDVIRDI DLYRIEPWDL QERCRIGYEE  60
QSEWYFFSHK DKKYPTGTRT NRATMAGFWK ATGRDKAVHD KNKLIGMRKT LVFYKGRAPN  120
GQKTDWIMHE VMDRLCDIFF CSYPHSQEEG WVVCRAFKKR ATSPTRILDD VWSCSYGYDY  180
VGRMNSMIDP MIRLQKQPVT LHCKQETESD ELRYLNSNQF VKLPQLESPS LTPATRPSSK  240
MTVLEEEDEE QARTPNGMEI VTDWRALDKF VASQLGQEGS SSVSAQVVSD FVGDNDSEMA  300
LLLLQSETKE VGKFNAFRSS GGPNCETGIC IFEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-48216012169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP3350470.0KP335047.1 Musa AAB Group cultivar Rasthali vascular related NAC-domain protein 2 (VND2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018676029.10.0PREDICTED: NAC domain-containing protein 37-like isoform X1
SwissprotQ9SL411e-130NAC37_ARATH; NAC domain-containing protein 37
TrEMBLM0RNY40.0M0RNY4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P03040_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36253768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-132vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]