PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P02740_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 330aa    MW: 37613.4 Da    PI: 6.5122
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P02740_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.6e-14125176155
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +r++h ++Er+RR+ +N+ +++Lr+l+P++   + ++ + a+i+  A+e++k+L+
  GSMUA_Achr11P02740_001 125 QRMTHIAVERNRRRLMNDHLATLRSLMPSS---YVQRGDQASIVGGAIEFVKELE 176
                             79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-15115186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-13123177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.49E-10123179No hitNo description
PROSITE profilePS5088815.034124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-11125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-9130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEPGAASARF SEHPEMRYES LFSRQMPFLQ LLQGAMQAED ETEEEKVELQ LQQYQHQSLF  60
TSCAQESNIE LLLRLQRQNC LEQLRTPERD KARAVEQLES CITHTSEKRP RQASTSKSPE  120
EAESQRMTHI AVERNRRRLM NDHLATLRSL MPSSYVQRGD QASIVGGAIE FVKELEHHLL  180
SLQYEKRLRA SAAVRSRSND DEQCHASTLH DGFFISPQYT GYSQWKRRRG DGKGDEAQQE  240
NATGMDVEAT LVQGHVNLKV AGRRRRGQLV RAIAAMEELR LSVLHLNIIC LEPSSILYSL  300
NLKMEEECKL GSADEVATAV HQIFSYINAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125136RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382232.10.0PREDICTED: transcription factor bHLH57-like
TrEMBLM0RNV40.0M0RNV4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P02740_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.14e-59bHLH family protein