PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P02040_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 1317aa    MW: 146104 Da    PI: 6.1062
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P02040_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.0008412841310123
                              EEET..TTTEEESSHHHHHHHHHH..T CS
                 zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                              ykC+   Cg++F+  s++ rH r+  H
  GSMUA_Achr11P02040_001 1284 YKCKfsGCGQTFRFVSDFSRHRRKtgH 1310
                              99*********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005457.1E-131657IPR003349JmjN domain
PROSITE profilePS5118313.1621758IPR003349JmjN domain
PfamPF023755.3E-131851IPR003349JmjN domain
SMARTSM005582.0E-45172341IPR003347JmjC domain
SuperFamilySSF511972.33E-26173336No hitNo description
PROSITE profilePS5118433.886175341IPR003347JmjC domain
PfamPF023731.2E-36205324IPR003347JmjC domain
SMARTSM003551812011223IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9712241253IPR007087Zinc finger, C2H2
SMARTSM003556912241248IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012261248IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-912521278IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.75912541283IPR007087Zinc finger, C2H2
SMARTSM003550.00112541278IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012561278IPR007087Zinc finger, C2H2
SuperFamilySSF576671.7E-1012641306No hitNo description
Gene3DG3DSA:3.30.160.606.5E-1112791307IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.22112841315IPR007087Zinc finger, C2H2
SMARTSM003550.1112841310IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012861310IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1317 aa     Download sequence    Send to blast
MSDSSEIPAW LKNLPLAPEY HPTETEFADP IAFISRVERE AAAFGICKVI PPLPRPSKKF  60
VLANLNRSLS ASPDHLKPPP SSPRSPAAVW QSGEFYTLEQ FEAKSKAFAR SQLGGIKEVS  120
PLLIETLFWK AASEKPIYVE YANDVPGSGF GPRRLCPQAI GEREGMGGVG WKLSNSPWNL  180
QAIARAPGSL TRFMPDEVPG VTSPMVYIGM LFSWFAWHVE DHELHSLNFL HLGSPKTWYA  240
VPGDYAATLE EIVRVQGYGG NMDRLAALIM LGEKTTLLSP EVLVASGVPC CRLVQHPGEF  300
VVTFPRAYHV GFSHGFNCGE AANFATPKWL MVAKEAAVRR AAMNYLPMLS HQQLLYMLSI  360
SFISSVPREL LSGARSSRLR DRKKEEREIL VKKAFLDDMM NESNLLFVLL AKATISSAVL  420
WEPEMLPATC LGTQCQSMGK DSLDYEGDAC CTQDAHETTA DLSGRSSHSA LFSEANENAC  480
NNTEGIMDVD EIDLPFGLDV DSGSLACVAC GILGYPFMAI LQPSEKASRN IIAANSNESH  540
PSLDMSQNLN LPSCQPCTAK KLDSDECVGV EEQRNPDARS NSHEDTVNVS LVENRSAVKE  600
SLSDTTPDML GEDVERSRFC HLIGPEKLST GNSLPVNCAS NEEHQQILSL MERQIHELRA  660
QDKNDGCVQA KRTHCSCTYE TTVVCGQHSC DKMKEPGPHI SLTSHSEVDN KACQGDYPGN  720
ISLDETDDVP ERKSSDEISN WNTCNGFLRP RIFCLQHALE IEDLLRCKGG VRVLIICHSD  780
YLKIKALAIS IAEEINIRFN CEDVPLVNAS PSDLDLINVS IDDEGHEEDG NDWTSKLGLN  840
LRYCAKLKKQ SPSNQEHLTL SLGGIFSDPS PTAVSNLKWL SRKSRTPHKV VVSWVTLRVT  900
TYSESVPPVK LPASHESDVG YSERLEIHSD GLSFKEAVCE PVKSASKQPF VDPELSQGFE  960
EAYRSQDKFC SSDKSEILAD RLTLESGTSE AQQVSAVDTA NLGDEFNGNR EAACGTGRRP  1020
LHYSLENLED SCRTSLSNDQ FLCLSESLIN SEIQLNNLSV QEPLGDDMVA NPANSNRMPD  1080
ISINDGSSVM QEVHSTELCV SADSSSLLNG AQPNYHNPAR VDLIQYVRRR NKRKRQQEQS  1140
TGCQDSSVCF VRSPCEGLRP RSWLKTDVKA DIFTLEKSSA IKERRRPGNS IVQREDKSKA  1200
FKCDIEGCFM SFQTRGELSL HKRDRCTIEG CGKRFSCHKY AVRHQCVHND DRPLRCPWKG  1260
CNMTFKWAWA RTEHVRVHTG ERPYKCKFSG CGQTFRFVSD FSRHRRKTGH YATPSAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-72103558346Transcription factor jumonji (Jmj) family protein
6ip4_A2e-72103558346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
111271133RRRNKRK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382141.10.0PREDICTED: probable lysine-specific demethylase ELF6
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLM0RNN40.0M0RNN4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P02040_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein