PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P01510_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 234aa MW: 26363.9 Da PI: 9.9269

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P01510_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.7	1.1e-32	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+e+LGG+ekAtPk +l+lm+v gLt++hvkSHLQ+YR+ GSMUA_Achr11P01510_001 19 PRLRWTPDLHHCFVNAIERLGGQEKATPKLVLQLMDVRGLTISHVKSHLQMYRS 72 8****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-31	14	74	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.494	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	4.66E-15	17	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-24	19	72	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-8	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MGNCGRNGAV RQYTRSKVPR LRWTPDLHHC FVNAIERLGG QEKATPKLVL QLMDVRGLTI 60 SHVKSHLQMY RSLRNDMGRQ ELQARKQSWD ENDGGADERD DAGSCSYSKP THQGFQSQSM 120 YSSTLPPLKR ARMETAATSK SWHCSHFLGE RIASQSCFDD YTPAAALGVE RGIKEEALRW 180 QKHAALLPFH HSPKFKVSGS RVEESISFKV DHKTAYPSAL PHPAKLFMPV FLAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-19	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-19	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-19	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-19	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-19	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-19	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-19	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-19	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009383036.1	1e-158	PREDICTED: transcription repressor KAN1-like
TrEMBL	M0RNI1	1e-176	M0RNI1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P01510_001	1e-177	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2966	35	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	3e-32	G2-like family protein