PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P01480_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 533aa    MW: 57757.6 Da    PI: 9.2831
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P01480_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-0589111123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             + C+ C+k F r  nL+ H r H
  GSMUA_Achr11P01480_001  89 FICEVCNKGFQREQNLQLHRRGH 111
                             89*******************88 PP
2zf-C2H217.31.3e-05165187123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             +kC +C+k++  +s+Lk H +t+
  GSMUA_Achr11P01480_001 165 WKCDKCSKRYAVQSDLKAHAKTC 187
                             58******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.44E-788111No hitNo description
Gene3DG3DSA:3.30.160.605.8E-688111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121712.6E-589111IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.005289111IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9989111IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-5153186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.44E-7160185No hitNo description
PROSITE profilePS501578.621165193IPR007087Zinc finger, C2H2
SMARTSM0035562165185IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MASASSSSPF FGGIRDEDLQ KQMKQQQQKS SATVPAPAAA SERKRRNQPG NPSNFSNLWP  60
QPNPHVSAAD PDAEVIALSP TSLLATNRFI CEVCNKGFQR EQNLQLHRRG HNLPWKLRQK  120
SSKEVRRRVY LCPEPTCVHH HPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKRYAVQSDL  180
KAHAKTCGTR EYRCDCGTLF SSERERETER EKGTSRSSKH VPISLHLFQC GSHISVHQGI  240
GEISQHIWRD SFITHRAFCD ALAQESSRPP TAGLHALGNH LYGNPTTMTS GLSQVNAHLS  300
SLQAQSHAPT DLLRTGGGPG SQLEHLISSA TPSSRPLHGL TQLHDLQCSS TITSSTSAAA  360
TAASVFNLGF FSHNSSSTSS IGNSNRTNSL YNTSMQSDLM LPQMSATALL QKAAQMGVTT  420
SGGPSLLRGF ARSSSSRCSF SGDGGDDGGG LQAQTENEAH LQNLMMTLAN GGTDLIAGGF  480
RALDTGLCIM DETKFDPSGV RNLEGSDQLT RDFLGVGSRV RSISSGITRR EPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-24161268364Zinc finger protein JACKDAW
5b3h_F3e-24161268364Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041881e-128AP004188.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1493_H11.
GenBankAP0149581e-128AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382083.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like isoform X1
RefseqXP_018676621.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like isoform X1
TrEMBLM0RNH80.0M0RNH8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P01480_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-102indeterminate(ID)-domain 4