PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P31400_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 314aa    MW: 34110.7 Da    PI: 7.9698
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P31400_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013115134221
                             EETTTTEEESSHHHHHHHHH CS
                 zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                             +Cp Cgk+F++  +L  H+r
  GSMUA_Achr10P31400_001 115 TCPECGKTFPSDKSLFGHLR 134
                             6*****************98 PP
2zf-C2H212.80.00037191213123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             y+C+ C k+Fs++  L  H  +H
  GSMUA_Achr10P31400_001 191 YQCSVCFKTFSSHQALGGHRASH 213
                             9***************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.201114141IPR007087Zinc finger, C2H2
SMARTSM003550.015114136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.5E-4115136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.43E-9115136No hitNo description
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
PfamPF139127.8E-8116138IPR007087Zinc finger, C2H2
SuperFamilySSF576676.43E-9186213No hitNo description
PfamPF139125.1E-8190215IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.24191218IPR007087Zinc finger, C2H2
SMARTSM003550.043191213IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280193213IPR007087Zinc finger, C2H2
PROSITE profilePS501579.577233260IPR007087Zinc finger, C2H2
SMARTSM003550.28233255IPR015880Zinc finger, C2H2-like
PfamPF139123.1E-9233255IPR007087Zinc finger, C2H2
PROSITE patternPS000280235255IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAARLVEGRS HHTTWDAAVA AEEQAHEELT KNTLRLRIKC PKTGDEDREA AAQVAVSPSG  60
DSGVIVDQST GGADGDLAGD EDANAESASE VKEVVDEGCG SFKRKHANRR AVVPTCPECG  120
KTFPSDKSLF GHLRCHPERD YRGVNPPPGA RKKPQPDAYS SIARVPPTTK WKIKELELVN  180
GSGTSVRCRR YQCSVCFKTF SSHQALGGHR ASHNKKKSNP VEAAAIPDEN EEHRCTNCNL  240
TFRSGQALGG HKRRHFNELQ HRAPSSSPHS SESDKGANGL LQNRVTSSSA HSSESYKGAK  300
HGLFDFDLNE VPEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM0RN140.0M0RN14_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P31400_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.14e-30C2H2-like zinc finger protein