PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P30710_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | bHLH | ||||||||
Protein Properties | Length: 440aa MW: 45222.5 Da PI: 6.5151 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37 | 6e-12 | 259 | 304 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq GSMUA_Achr10P30710_001 259 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 304 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.23E-17 | 252 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.02E-13 | 252 | 308 | No hit | No description |
PROSITE profile | PS50888 | 17.39 | 254 | 303 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-16 | 256 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-9 | 259 | 304 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-13 | 260 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MQHGSREVRG GMAASASAQM ALHDDHGSQQ IQNPGLHDDF FDQMLSGLPS AWPDLGNPKS 60 PWDASAAQKL FRIDLAGKQP DESQPEAAAE GLRYASYEEA TMLASRLSQS QGSGGSSPTG 120 EAMMLQLNNH HILPAVGRSQ TAVGGSVGES GLLPLPLTLG SGGAADPRII VETPRDEMDR 180 PYKSPDHNGG EELYNGLGGS IRAAQAATGQ HFHHPQSYGG AAAPAGVGQG PAASASSGGG 240 TPPQKQKVRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKTDKA SMLDEIIDYV 300 KFLQLQVKVL SMSRLGGAAA VAPLVADIST EGPGGRAGAN GAAAGNNDSL TVTEHRVAKM 360 MEEDMGSAMQ YLQGKGLCLM PISLASAISS AACRPSAGGL VPAPPPATTS AAAAAESPSS 420 PSASALTVQS AAADTTAPKR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 263 | 268 | RLRRER |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018674769.1 | 0.0 | PREDICTED: transcription factor bHLH82-like isoform X3 | ||||
Swissprot | Q9ZUG9 | 9e-78 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | M0RMU5 | 0.0 | M0RMU5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P30710_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1419 | 37 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 2e-46 | LJRHL1-like 1 |
Publications ? help Back to Top | |||
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