PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P30400_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | C2H2 | ||||||||
Protein Properties | Length: 351aa MW: 38219.6 Da PI: 8.7406 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.6 | 2.7e-07 | 147 | 167 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H GSMUA_Achr10P30400_001 147 CEICGKGFKRDANLRMHMRAH 167 *******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.99E-6 | 142 | 168 | No hit | No description |
PROSITE profile | PS50157 | 11.718 | 145 | 167 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.5E-6 | 145 | 167 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0035 | 145 | 167 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 147 | 167 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 38 | 200 | 233 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 32 | 238 | 260 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MNGSGGRNPG QEPFLPLGGG GGDPGGAPLA SHDPFLPLLN LSALGQKMDS LRRFLSDAID 60 SRTVIGDDQL QMVSSHIASA VQGIILNGAA LLASSQPLNP SPSFAAAGGP TSRDAPPTSD 120 PAAAIGEEDD IVEIDAAELL AEHVHLCEIC GKGFKRDANL RMHMRAHGDR FKTLEALSKP 180 DREVRPSDGG EAVPGRRVRF SCPYPGCNRN RAHKKFRPLK SVACVKNHFK RSHCPKMYSC 240 HRCNKKNFSV VADLRSHLKH CGMTRWRCSC GTSFSRKDKL FGHITLFEGH MPAVEVGAEE 300 EVKKKGVILE WKDALASLCE IHQRCFVISG QRQGDRTHFG AFSRIFHLDL S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009381502.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
Swissprot | Q9C8N5 | 2e-71 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | M0RMR4 | 0.0 | M0RMR4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P30400_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12550 | 32 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 8e-70 | C2H2 family protein |