PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P29970_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 285aa    MW: 32081.1 Da    PI: 5.6351
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P29970_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.7e-161461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd++l++ +   G  +W+++++  g+ R++k+c++rw +yl
  GSMUA_Achr10P29970_001 14 KGPWTAEEDKRLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                            79******************************99************97 PP
2Myb_DNA-binding513.4e-1671111547
                             -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             ++ E++  ++++ +lG++ W++Ia++++ gRt++++k++w+++
  GSMUA_Achr10P29970_001  71 SEAEEKMVIELHSKLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                             899***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-20563IPR009057Homeodomain-like
PROSITE profilePS5129413.758961IPR017930Myb domain
SuperFamilySSF466892.16E-2711108IPR009057Homeodomain-like
SMARTSM007174.6E-121363IPR001005SANT/Myb domain
PfamPF002491.8E-141461IPR001005SANT/Myb domain
CDDcd001675.34E-81661No hitNo description
PROSITE profilePS5129427.20662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-2564116IPR009057Homeodomain-like
SMARTSM007171.0E-1566114IPR001005SANT/Myb domain
PfamPF002497.7E-1570111IPR001005SANT/Myb domain
CDDcd001673.06E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDKRLINFIL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SEAEEKMVIE LHSKLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLRRMG  120
IDPLTHEPLI PSANDLLHQE QHQVGASADR REGNDKVSEE QGEEENITSA VDDAFCTDEV  180
PMIQPHEMIV PCASTPSASF SISSSSSSSS SSSSSSCSSS CSSVKAQEIQ PPCMEWPESV  240
CLWGLDELNG WDFNYAQGDE QLGLDLFTQW QRTALDQETW KFELF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00513DAPTransfer from AT5G16600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381446.10.0PREDICTED: protein ODORANT1-like isoform X2
TrEMBLM0RMM10.0M0RMM1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P29970_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.18e-94myb domain protein 43