PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P28630_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family G2-like
Protein Properties Length: 209aa    MW: 23076.9 Da    PI: 10.0653
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P28630_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like993.2e-3193146255
                 G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             pr+rWt+ LH++Fv+ave LGG+e+AtPk+ilelm+vk+Ltl hvkSHLQ YR+
  GSMUA_Achr10P28630_001  93 PRMRWTTSLHAHFVHAVELLGGHERATPKSILELMNVKDLTLVHVKSHLQTYRT 146
                             9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-2890147IPR009057Homeodomain-like
SuperFamilySSF466893.58E-1690147IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-2393146IPR006447Myb domain, plants
PfamPF002492.7E-894145IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEDKCTDLSL QISASSTTVI HGSSPNWDLF GDPSMEEPIS SRRRSEVNEP KYGEPSLRLE  60
LKVQASGPDD HRRNQHPRSG VKRSLGKRSS RAPRMRWTTS LHAHFVHAVE LLGGHERATP  120
KSILELMNVK DLTLVHVKSH LQTYRTVRST NRVAGQTQAD MGMSKRTGSG EAEEVLAGDK  180
AGNEFIIPSY TSLTSSTTPP RTLPNPQGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-1894148458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-1894148458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-1894148458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-1894148458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-1894148458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-1894148458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-1894148458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-1894148458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018674981.11e-152PREDICTED: probable transcription factor KAN4
TrEMBLM0RM871e-152M0RM87_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P28630_0011e-153(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17695.14e-36G2-like family protein