PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P28540_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family G2-like
Protein Properties Length: 388aa    MW: 42204.6 Da    PI: 7.7852
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P28540_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like971.4e-30257312156
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                             k r++W+peLH+rF+ a+++LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  GSMUA_Achr10P28540_001 257 KVRRCWSPELHRRFLFALQKLGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 312
                             679***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.227254314IPR017930Myb domain
SuperFamilySSF466895.82E-17255315IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-27256316IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-26257312IPR006447Myb domain, plants
PfamPF002493.3E-6259310IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MGSSAAADVS LDLKLFTART VAGFLKEALV MEIGDGRVAK LEESVRSLEE EKRKIEAFKR  60
ELPLCMHLLT DVIEGLEKEL EKCRGERCAR VFGESIPIKE KFEEEGREKV EKDCEAKMNW  120
MSSAQLWSDN PNRNNCKDNK NEKKVTPEGG GELKRQQKKE NLFLESKSLS GGGAFVPFKG  180
LSAVTANGEE GKPTVALPDL SLQAPAMDNG ALTLSAVTEG HFVSGSGSKG AGRAPTSAPA  240
TAGDHPSSQA QQPPPRKVRR CWSPELHRRF LFALQKLGGA QVATPKQIRE LMKVDGLTND  300
EVKSHLQKYR LHARRMPNSS DAVNRRVAVA GGVWVPEEQY SNSSQQSVSQ SGSPQSPLQL  360
AGATPVVSVT AGDSCEEEDG KSESFSWK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4674264e-86EF467426.1 Musa balbisiana microsatellite Mbc10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381276.10.0PREDICTED: myb family transcription factor EFM
TrEMBLM0RM780.0M0RM78_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P28540_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.14e-46G2-like family protein