PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P27770_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

BES1

Protein Properties

Length: 281aa MW: 30450.8 Da PI: 9.3772

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P27770_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	171.8	3.8e-53	2	122	1	123
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssas 87 ++++r+ptw+ErEnn+rRERrRRaiaa iyaGLR++Gnyklpk++DnneVlkALc eAGw+ve+DGttyrkgskp + a ss GSMUA_Achr10P27770_001 2 TSGTRMPTWRERENNRRRERRRRAIAANIYAGLRMYGNYKLPKHCDNNEVLKALCDEAGWTVEPDGTTYRKGSKPS--VDPASSSYI 86 5899***********************************************************************9..666666766 PP DUF822 88 aspesslqsslkssalaspvesysaspksssfpsps 123 +++++s++ + +s ++ + ysas ++ss++ + GSMUA_Achr10P27770_001 87 TNTNNSINGADGNSLIPWLKNLYSASSSASSSMFRH 122 777777776667777777777777776666655444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	3.1E-47	3	77	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MTSGTRMPTW RERENNRRRE RRRRAIAANI YAGLRMYGNY KLPKHCDNNE VLKALCDEAG 60 WTVEPDGTTY RKGSKPSVDP ASSSYITNTN NSINGADGNS LIPWLKNLYS ASSSASSSMF 120 RHQQPLFMGG GSISAPVTPP MSSPTASTPC IKTDWYDQSA QPLWPGTSYK FLPNSTPPSP 180 GRQMIPDPAW IAGLQIETTS PSSPTFSLVS SNPFGFSGGG SSRMWTPGQS GTSSPFAFGS 240 SSNGNSLRGL VKPWEGERIH EECGPDDLQL TLGSSRTRAD A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	1e-21	6	76	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	1e-21	6	76	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	1e-21	6	76	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	1e-21	6	76	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Functional Description ? help Back to Top
Source	Description
UniProt	May function in brassinosteroid signaling. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101229	6e-69	AK101229.1 Oryza sativa Japonica Group cDNA clone:J033031H19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009381197.1	1e-163	PREDICTED: BES1/BZR1 homolog protein 4-like
Swissprot	Q5Z9E5	1e-98	BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBL	M0RM01	0.0	M0RM01_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P27770_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1366	38	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	6e-55	BES1/BZR1 homolog 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]