PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P27560_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Dof
Protein Properties Length: 228aa    MW: 24781.5 Da    PI: 7.6806
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P27560_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.81.3e-392484262
                  zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                            ++++l+cprCdstntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rkn k+s
  GSMUA_Achr10P27560_001 24 QDQNLRCPRCDSTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNIPVGGGTRKNSKRS 84
                            68999****************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-251877IPR003851Zinc finger, Dof-type
PfamPF027012.5E-332582IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.452882IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103066IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MQDRTAAEAA APRIQAAKPQ FPEQDQNLRC PRCDSTNTKF CYYNNYNLSQ PRHFCKSCRR  60
YWTKGGALRN IPVGGGTRKN SKRSNSFSSS AASSCKRPNP PKPPSQLSEF PKTEPISLVY  120
PPLDPDRHLL DMTGSFSSLL ASDGHLESLL GSFDPVGGDA AVLPNSSNAN RSCVGIQGLE  180
LQSSTGDSGN EIMTTPVIQN FERLEGDSGC WDAGWTDLAI YNPGSSMQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00199DAPTransfer from AT1G51700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9554931e-41AY955493.2 Triticum aestivum Dof1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381855.11e-170PREDICTED: dof zinc finger protein DOF3.1-like
SwissprotO821555e-41DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLM0RLY01e-169M0RLY0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P27560_0011e-169(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.15e-36DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]