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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P25270_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ERF | ||||||||
Protein Properties | Length: 177aa MW: 19120.4 Da PI: 5.669 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.2 | 4.3e-18 | 32 | 81 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr ++ +g+Wv+eIr p ++++r++lg++ t+e Aa+a++aa ++l+g GSMUA_Achr10P25270_001 32 HYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAAVLCLKG 81 7*****998.**********9...336************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-30 | 31 | 90 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.44E-21 | 32 | 91 | No hit | No description |
SMART | SM00380 | 1.8E-34 | 32 | 95 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-11 | 32 | 81 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-20 | 32 | 91 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.72 | 32 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-8 | 33 | 44 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-8 | 55 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MVKSSSSKVL QASADSNNNS TPSKLGSNGK RHYKGVRMRS WGSWVSEIRA PNQKTRIWLG 60 SYSTPEAAAR AYDAAVLCLK GSSASLNFPA SPPFHVPDAI MSPKSIQRVA AAAAADATIQ 120 TEEAPFGDDC LLDTIDVEAF FQSPKFMDYM LHPSSFFGPS QVDDCGEEGD ISLWSFC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-14 | 31 | 89 | 4 | 63 | ATERF1 |
3gcc_A | 1e-14 | 31 | 89 | 4 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009380924.1 | 1e-109 | PREDICTED: ethylene-responsive transcription factor ERF014-like | ||||
TrEMBL | M0RLA1 | 1e-128 | M0RLA1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P25270_001 | 1e-129 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3197 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 3e-37 | ERF family protein |