PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P25230_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 252aa    MW: 28556.2 Da    PI: 7.5601
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P25230_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.11.8e-35231152102
                             HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
            HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                             Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa++vLp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF+++ F+
  GSMUA_Achr10P25230_001  23 FLTKTYQLVDDPATDHIVSWGdDRTSTFVVWRPPEFARDVLPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFR 100
                             9********************667799***************************************999.........********* PP

                             XXXXXXXXXXXXXXX CS
            HSF_DNA-bind  88 kgkkellekikrkks 102
                             kg+k+ll++i+r+k+
  GSMUA_Achr10P25230_001 101 KGEKHLLCEIHRRKT 115
                             ************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.1E-3714108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5719113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.01E-3220113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.2E-202346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-3123113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-206274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEMCWEGGGG VAAETNKPLP APFLTKTYQL VDDPATDHIV SWGDDRTSTF VVWRPPEFAR  60
DVLPNYFKHN NFSSFVRQLN TYGFRKVVPE RWEFANEFFR KGEKHLLCEI HRRKTCSPSS  120
SSFPFASSPP SFPLYHHFDD YRLAATAAAL LDENERLRRS NAALLSELAH MRKLYNDIIY  180
FVQNHNRGCN EESSSAKPKL FGVPLDGCTS SSNNKRGLDV HETTTSPSTK PRLVLDKEDL  240
GLNLMPSSPP PC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-22811517131Heat shock factor protein 1
5d5v_B2e-22811517131Heat shock factor protein 1
5d5v_D2e-22811517131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1017005e-38AK101700.1 Oryza sativa Japonica Group cDNA clone:J033060E19, full insert sequence.
GenBankAY3444845e-38AY344484.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF2 mRNA, complete cds.
GenBankCT8310265e-38CT831026.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111P18, full insert sequence.
GenBankCU4063545e-38CU406354.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108F04, full insert sequence.
GenBankCU4068845e-38CU406884.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380920.11e-135PREDICTED: heat stress transcription factor B-4c-like
SwissprotQ9C6359e-82HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLM0RL970.0M0RL97_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P25230_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-64heat shock transcription factor B4