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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P24090_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | bHLH | ||||||||
Protein Properties | Length: 400aa MW: 42163.4 Da PI: 6.6123 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.2 | 5.3e-12 | 209 | 254 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq GSMUA_Achr10P24090_001 209 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 254 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.41E-13 | 202 | 258 | No hit | No description |
SuperFamily | SSF47459 | 2.22E-16 | 202 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.39 | 204 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.3E-16 | 206 | 260 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-9 | 209 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.0E-14 | 210 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MQPSSKEMQA MVGGLPASAV AAHIALQELQ NGGGADHDDF LDQMMSGLAP AWQMGLGGYD 60 DASLLTSRLR QHQAAGGGSP PPTGKSMLLQ LNHHHYSHHA SPQQQLLLQS MGLPPAGGGG 120 DSGGFLPLPL SLGSGGSRDS GLLFDRSREE VDAPFKSSDS TEAEALYNGL GESLQRAAQA 180 PNHHHHFPHP QSLNVPRVRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKTDKA 240 SMLDEIIDYV KFLQLQVKAM PLSLSLSLSL SLSLSLSLSF SCYDSIQSRG ADGAAADDGL 300 TAAENQVTKL LEEDMGSAMQ YLQGKGLCLM PISLASAISS ATCHPRPPIP GGLSQLIRRT 360 APSPHAAGDA PSSPSMSALT VQSTNGGGDA DVSRPSRCKD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 213 | 218 | RLRRER |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT062076 | 9e-44 | BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds. | |||
GenBank | KJ727938 | 9e-44 | KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009380793.2 | 0.0 | PREDICTED: transcription factor bHLH82-like | ||||
TrEMBL | M0RKY4 | 0.0 | M0RKY4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P24090_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1419 | 37 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 5e-51 | LJRHL1-like 1 |