PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 182aa MW: 20907 Da PI: 8.9417

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P23440_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62	8.9e-20	52	106	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++ eql Le+ F+ ++++ ++++eLA++l+L+ rqV vWFqNrRa+ k GSMUA_Achr10P23440_001 52 RKKLRLSGEQLALLEDSFRAHSTLAPDQKQELAQRLHLQPRQVEVWFQNRRARTK 106 6788899**********************************************98 PP
2	HD-ZIP_I/II	121.4	4.5e-39	52	142	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 +kk+rls eq++lLE+sF+++++L p++K+ela++L+lqprqv+vWFqnrRARtk+kq+E+d+ +L+r++++l++en+rL++e e+ GSMUA_Achr10P23440_001 52 RKKLRLSGEQLALLEDSFRAHSTLAPDQKQELAQRLHLQPRQVEVWFQNRRARTKLKQTEVDCGFLRRCCERLANENRRLKRELMEM 138 69************************************************************************************9 PP HD-ZIP_I/II 88 reel 91 r+ + GSMUA_Achr10P23440_001 139 RSVV 142 9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.297	48	108	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.41E-19	50	117	IPR009057	Homeodomain-like
SMART	SM00389	1.4E-17	50	112	IPR001356	Homeobox domain
CDD	cd00086	2.78E-14	52	109	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.1E-18	52	106	IPR009057	Homeodomain-like
Pfam	PF00046	5.8E-17	52	106	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	83	106	IPR017970	Homeobox, conserved site
SMART	SM00340	1.4E-14	108	152	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	4.4E-9	108	140	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MLLIITNCFE EECNVSLSLA IGGVGDLPFI KNLNQTSFKE ETEEKRDGGG TRKKLRLSGE 60 QLALLEDSFR AHSTLAPDQK QELAQRLHLQ PRQVEVWFQN RRARTKLKQT EVDCGFLRRC 120 CERLANENRR LKRELMEMRS VVKPGPQLSV EHRKAARLRM CSSCEKMTSD EKESSLLSTI 180 NS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	50	56	TRKKLRL
2	100	108	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009380740.1	1e-123	PREDICTED: homeobox-leucine zipper protein HOX17-like
Refseq	XP_018675047.1	1e-123	PREDICTED: homeobox-leucine zipper protein HOX17-like
Swissprot	A2X674	5e-45	HOX7_ORYSI; Homeobox-leucine zipper protein HOX7
Swissprot	Q0E0A6	5e-45	HOX7_ORYSJ; Homeobox-leucine zipper protein HOX7
TrEMBL	M0RKR9	1e-129	M0RKR9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P23440_001	1e-130	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8315	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	1e-45	homeobox protein 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]