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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSMUA_Achr10P23440_001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family |
HD-ZIP |
Protein Properties |
Length: 182aa MW: 20907 Da PI: 8.9417 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSMUA_Achr10P23440_001 | genome | CIRAD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 62 | 8.9e-20 | 52 | 106 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++ eql Le+ F+ ++++ ++++eLA++l+L+ rqV vWFqNrRa+ k
GSMUA_Achr10P23440_001 52 RKKLRLSGEQLALLEDSFRAHSTLAPDQKQELAQRLHLQPRQVEVWFQNRRARTK 106
6788899**********************************************98 PP
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2 | HD-ZIP_I/II | 121.4 | 4.5e-39 | 52 | 142 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87
+kk+rls eq++lLE+sF+++++L p++K+ela++L+lqprqv+vWFqnrRARtk+kq+E+d+ +L+r++++l++en+rL++e e+
GSMUA_Achr10P23440_001 52 RKKLRLSGEQLALLEDSFRAHSTLAPDQKQELAQRLHLQPRQVEVWFQNRRARTKLKQTEVDCGFLRRCCERLANENRRLKRELMEM 138
69************************************************************************************9 PP
HD-ZIP_I/II 88 reel 91
r+ +
GSMUA_Achr10P23440_001 139 RSVV 142
9765 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 182 aa
Download sequence Send
to blast |
MLLIITNCFE EECNVSLSLA IGGVGDLPFI KNLNQTSFKE ETEEKRDGGG TRKKLRLSGE 60 QLALLEDSFR AHSTLAPDQK QELAQRLHLQ PRQVEVWFQN RRARTKLKQT EVDCGFLRRC 120 CERLANENRR LKRELMEMRS VVKPGPQLSV EHRKAARLRM CSSCEKMTSD EKESSLLSTI 180 NS
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 50 | 56 | TRKKLRL |
2 | 100 | 108 | RRARTKLKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |