PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P23250_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 391aa    MW: 42994.4 Da    PI: 8.2121
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P23250_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.73.5e-12527326
                            S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                             elCr+f+r G C+yGdrCkF H+
  GSMUA_Achr10P23250_001  5 KELCRNFQR-GSCQYGDRCKFLHV 27
                            79*******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.32E-6226IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.281229IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-8328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-9426IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-10527IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MNRRKELCRN FQRGSCQYGD RCKFLHVTQQ QSKANPFGFG TGTLHFPNAT QQQKPNPFGF  60
GVQSNTQSQN NTHLKASSNF GAQHQNPAKP FENKWTRSSS LTPTNTNSLQ HTEAQPQAPA  120
HKCTDPESCK RQIVEDYKNE APLWKLTCYG HRKNGPCDIV GDISFEELRA AAYEDARQGL  180
SLQSIVERER NLYLSKLNEF DNLLKNSYGS QNPSFPQMSQ SPMSMNNTSS TNVQSNAAPS  240
FSSFSQLTTN LGLNSRTNPP GTPNGTGFVQ PSLFQNASQN SVGFGVKFGA PGGFGQQPTQ  300
PSGNTPSPSL STFNIGVKSP GSPFPLTSQQ FGGMNNQQPN LLTGFNVSSV TVEQASITDE  360
QQEGSPDDSI WLKEEWKIGE IPERPPPERF C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380720.10.0PREDICTED: zinc finger CCCH domain-containing protein 46
TrEMBLM0RKQ00.0M0RKQ0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P23250_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94472829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.14e-66C3H family protein