PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P23050_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 595aa    MW: 63978.4 Da    PI: 7.2628
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P23050_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.1e-08187207526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                             +C+ f++ G C+ Gd C +aHg
  GSMUA_Achr10P23050_001 187 PCPEFRK-GSCRNGDACEYAHG 207
                             8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002483.4434IPR002110Ankyrin repeat
PROSITE profilePS5029713.708479IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.95E-9481IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.2E-11594IPR020683Ankyrin repeat-containing domain
PfamPF127963.5E-6571IPR020683Ankyrin repeat-containing domain
CDDcd002048.60E-10695No hitNo description
SMARTSM002484.53971IPR002110Ankyrin repeat
PROSITE profilePS5008810.7133974IPR002110Ankyrin repeat
PROSITE profilePS5010313.094182209IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5182208IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-5185208IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-5187207IPR000571Zinc finger, CCCH-type
SMARTSM0035641217240IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.934217241IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MGLQQRTPLM VAALHGSTAV LEYVLAACPS EVLRCSSSDA ATALHCAASG GATSSPTAVE  60
LLLAASADVD ALDAAGNRPG DVIARQIPAP VARSLEVTLK APSFPRVPSP GKGGEAKQGE  120
KKEYPPDSTL PDIKNGIYCT DEFRMYTFKV KPCSRAYSHD WTECPFVHPG ENARRRDPRK  180
FLYSCVPCPE FRKGSCRNGD ACEYAHGVFE SWLHPAQYRT RLCKDEVGCN RRVCFFAHKP  240
EELRTVNPMA ASVTGMVTPS LGLSSPRLSP LDMATALLLM QQQQQPGSPI SRLKASLSAR  300
DMEFNLDMLG LEGYQHKLID NISASPRANW GKNSLVAAAS GTRSSEFTDP LGPLNPSLLA  360
QFQGLSMKQT VPQFQSPTGI HMPQLSGYGG NLPSSPPTAV TPILGGADHS MAKAIMNSRA  420
ATFAKRSQSF CDRGAAAGRQ PTLFATTNAA VATESALSDW GSPDGKLDWG VRGEELNKLR  480
KSASFDFRDK HNTSGALSTA SAALDLDESD VSWVQSLVKD GPVPLGGRID MGKQQNEHQT  540
NGEGDFYCPE MNSGSRNSYV FFKPVVGAFD HMVAYLPLTL DFFGICVMGV QFDAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380689.10.0PREDICTED: zinc finger CCCH domain-containing protein 33-like
SwissprotQ688R31e-175C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33
TrEMBLM0RKN00.0M0RKN0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P23050_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60132133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-111C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]