PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P22970_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LBD | ||||||||
Protein Properties | Length: 250aa MW: 26978.4 Da PI: 6.6119 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.6 | 3.6e-42 | 87 | 186 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +CaaCk+lrr+Ca +Cvlapyfp ++p kf +h++FGasn++kll++lpe++r da+ss+vyeA+ar+rdPvyG++g i++lq+q+ GSMUA_Achr10P22970_001 87 PCAACKILRRRCAGKCVLAPYFPPTEPLKFTTAHRVFGASNIIKLLQDLPESQRADAVSSMVYEANARIRDPVYGCAGAIFQLQKQV 173 7************************************************************************************** PP DUF260 88 eqlkaelallkee 100 ++l+a+la++++e GSMUA_Achr10P22970_001 174 NELQAQLAQAQAE 186 ********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.256 | 86 | 187 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.7E-42 | 87 | 184 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MASCSSALAL YMYSPGLEAS HHHLDSFPPP SSKAMKSSDP TTTITSSFQH SSSSSSSNSS 60 SPTSSPISSS PPSLPPTTPP PPVIHSPCAA CKILRRRCAG KCVLAPYFPP TEPLKFTTAH 120 RVFGASNIIK LLQDLPESQR ADAVSSMVYE ANARIRDPVY GCAGAIFQLQ KQVNELQAQL 180 AQAQAELLNL QAQHKNLIAL ICVEVAQNQQ DRAPRSTDAL AAGNYLLQND AYFLDEINQE 240 GSVWDEPLWI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-43 | 76 | 189 | 3 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-43 | 76 | 189 | 3 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009380677.1 | 0.0 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 1e-68 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | M0RKM2 | 0.0 | M0RKM2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P22970_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 4e-55 | LOB domain-containing protein 1 |