PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P21260_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 449aa    MW: 48781.7 Da    PI: 9.1052
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P21260_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-055981123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            + C++C+k F r  nL+ H r H
  GSMUA_Achr10P21260_001 59 FACEICNKGFQRDQNLQLHRRGH 81
                            78*******************88 PP
2zf-C2H211.40.00099135157123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             +kC +C+k +  +s+ k H + +
  GSMUA_Achr10P21260_001 135 WKCDKCSKKYAVQSDWKAHSKIC 157
                             58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-65881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.71E-75881No hitNo description
SMARTSM003550.0345981IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0535981IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM0035594100130IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-4123156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.71E-7130155No hitNo description
SMARTSM00355150135155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MSNLTSASGE ASVSSNHQST FASPNPNPPK KKRNLPGNPD PDAEVIALSP KTLMATNRFA  60
CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SSKEVRKKVY VCPEATCVHH DPSRALGDLT  120
GIKKHFSRKH GEKKWKCDKC SKKYAVQSDW KAHSKICGTR EYRCDCGTLF SRRDSFITHR  180
AFCDALAEES ARAMAANPFA NHLFSQPTAS SNEANTSIVS GHGMQGELSP EREHQPRQFD  240
MRSNIPPWLT CQGPITTSLN HLDLPSSSSV YSVRLQQEYS RGNPQVHRPP IPPAFQASAS  300
SPHMSATALL QKAAEMGATM SRPKHLGLMA AHATSSAVPP NNNTASFALG LSSHQEMGNC  360
SGDGDASGGR GGASNNSMGG FARSHGMVEE GGGGSGGNDG MTRDFLGLKP FPERDILDLT  420
AFDPCLGSSS YEHHRQSKKP CHGQLLPEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-35131192364Zinc finger protein JACKDAW
5b3h_F8e-35131192364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18597KLKQRSSKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380447.10.0PREDICTED: protein indeterminate-domain 7-like
RefseqXP_009380448.10.0PREDICTED: protein indeterminate-domain 7-like
SwissprotQ8H1F51e-119IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLM0RK510.0M0RK51_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P21260_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.12e-94indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]