PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P19700_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 310aa MW: 34301.1 Da PI: 10.3156

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P19700_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100	1.6e-31	169	224	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r+ W+peLH++F++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ GSMUA_Achr10P19700_001 169 KARRSWSPELHRCFLHALHQLGGSDVATPKQIRELMKVDGLTIDEVKSHLQKYRLH 224 689***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.509	166	226	IPR017930	Myb domain
SuperFamily	SSF46689	7.17E-18	167	226	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-28	167	227	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.2E-26	169	224	IPR006447	Myb domain, plants
Pfam	PF00249	3.1E-8	171	222	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MDLLGRAQRC QDCIRALEEE RKKIKAFQRE LPLCLHLVTR AIESVRHVMG DDEKVNHGPV 60 TEELIPPMSE QRSEAKKSAA VGSEMKLRSV QLRNQEPDTE PPKKPIVAIS KKIGSAFQPF 120 QRQKYVVPPP ASSAATAIPA TTDGDGGRDY GSKEGNREKK EEQLQPHRKA RRSWSPELHR 180 CFLHALHQLG GSDVATPKQI RELMKVDGLT IDEVKSHLQK YRLHGRRRSP AVQCSSNGSL 240 AVSPQVVLVG GIVVPSPDYN MADAAVAAAA QPANGARAPS NGMYAPVASH PSDSRYRQKQ 300 PQRSITLRWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-17	169	222	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-17	169	222	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	8e-17	169	222	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-17	169	222	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-17	169	222	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-17	169	222	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-17	169	222	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-17	169	222	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-17	169	222	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-17	169	222	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-17	169	222	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-17	169	222	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009381734.1	0.0	PREDICTED: myb family transcription factor EFM-like
Swissprot	Q9FPE8	2e-64	HHO3_ARATH; Transcription factor HHO3
TrEMBL	M0RJP5	0.0	M0RJP5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P19700_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6470	37	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	1e-63	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]