PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P18770_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 357aa MW: 39407 Da PI: 7.8706

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P18770_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.5	5.4e-37	98	157	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCyynnys++qPry+C++C+ryWt+GG++rnvPvG+grrknk+s GSMUA_Achr10P18770_001 98 PDKTLPCPRCKSLDTKFCYYNNYSVNQPRYLCRNCQRYWTAGGTMRNVPVGAGRRKNKNS 157 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-27	95	155	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-31	100	156	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.894	102	156	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	104	140	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MSENGDAAIK LFGKTIPLRP SSSGGHDEKD HQEGEGALKS RKQDHESSDS QEKNEPATST 60 SDLHTPASVD PEDVSTKNSS HKEEEEDDEE SQRSVKKPDK TLPCPRCKSL DTKFCYYNNY 120 SVNQPRYLCR NCQRYWTAGG TMRNVPVGAG RRKNKNSCHI RRIALSESAI RALQSDARYP 180 QSTVLNFDSM ASALVLPENT GSQNYQRTIA PIPCFSGSPW RYPWNPALSF CASSLPVPFY 240 PAAAYWSGPW LSPAASSSPD GCLPRSGSST TPTLGKHSRD DTCILIPKTP RIDDPEEAAK 300 SSLWTMVGIS NGELLKAFQP KREIKNQVPT LLHVNPAALC RSLNFQEASR MIDLPFA

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MSENGDAAIK LFGKTIPLRP SSSGGHDEKD HQEGEGALKS RKQDHESSDS QEKNEPATST  60
SDLHTPASVD PEDVSTKNSS HKEEEEDDEE SQRSVKKPDK TLPCPRCKSL DTKFCYYNNY  120
SVNQPRYLCR NCQRYWTAGG TMRNVPVGAG RRKNKNSCHI RRIALSESAI RALQSDARYP  180
QSTVLNFDSM ASALVLPENT GSQNYQRTIA PIPCFSGSPW RYPWNPALSF CASSLPVPFY  240
PAAAYWSGPW LSPAASSSPD GCLPRSGSST TPTLGKHSRD DTCILIPKTP RIDDPEEAAK  300
SSLWTMVGIS NGELLKAFQP KREIKNQVPT LLHVNPAALC RSLNFQEASR MIDLPFA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009380153.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	M0RJF2	0.0	M0RJF2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P18770_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-68	cycling DOF factor 2