PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P18600_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 285aa    MW: 32630.3 Da    PI: 9.2946
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P18600_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.84.5e-313686151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs +gklyey++
  GSMUA_Achr10P18600_001 36 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIIFSAKGKLYEYAT 86
                            79***********************************************86 PP
2K-box93.14.6e-31109186885
                   K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                             s e + + +++qe+akLk++ie L ++qRhl+Ge+L+sLslkeLqqLe+qL++slk+iRs+K++++l++i elq+k  
  GSMUA_Achr10P18600_001 109 SSEPEFQGNWYQEYAKLKAKIEALHKSQRHLMGEQLDSLSLKELQQLEHQLDTSLKQIRSRKHKVMLDSITELQRKVS 186
                             455556789******************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-402887IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.8982888IPR002100Transcription factor, MADS-box
CDDcd002654.41E-4129103No hitNo description
SuperFamilySSF554558.89E-3429115IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003084IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-313050IPR002100Transcription factor, MADS-box
PfamPF003191.7E-253784IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-315065IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-316586IPR002100Transcription factor, MADS-box
PfamPF014861.5E-24115215IPR002487Transcription factor, K-box
PROSITE profilePS5129716.934115225IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEGGLCCAVR GSAFSDWVSR SEEGSIEMGR GRVQLKRIEN KINRQVTFSK RRSGLLKKAH  60
EISVLCDAEV ALIIFSAKGK LYEYATDSCM EKILERYERY CYAEKALTSS EPEFQGNWYQ  120
EYAKLKAKIE ALHKSQRHLM GEQLDSLSLK ELQQLEHQLD TSLKQIRSRK HKVMLDSITE  180
LQRKVSIPKY QSTTSLKSLS LHTQVKQLQE QNKGLEKELM EKQKLKVVAQ QAQWEQQNPP  240
SSFLVAESHP TLCIGTSYHG EGDAQAHVRN SSSLLPPWMH RHLNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-2228111183MEF2C
5f28_B4e-2228111183MEF2C
5f28_C4e-2228111183MEF2C
5f28_D4e-2228111183MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380134.20.0PREDICTED: truncated transcription factor CAULIFLOWER A-like, partial
SwissprotQ6E6S71e-100AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLM0RJD50.0M0RJD5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P18600_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115137113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-80AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]