PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P17770_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 399aa MW: 44462.6 Da PI: 8.8357

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P17770_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.6e-06	53	75	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H GSMUA_Achr10P17770_001 53 YVCEICNQGFQRDQNLQMHRRRH 75 9*********************9 PP
2	zf-C2H2	16.9	1.8e-05	130	152	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ GSMUA_Achr10P17770_001 130 WVCSKCSKAYAVQSDYKAHLKTC 152 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.06E-5	52	75	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.5E-6	52	75	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.97	53	75	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0052	53	75	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	55	75	IPR007087	Zinc finger, C2H2
SMART	SM00355	120	94	124	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.4E-4	121	151	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.06E-5	125	150	No hit	No description
SMART	SM00355	50	130	157	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MLSSPQKTPP HTSISCLEDG SSSKRKRRPA GTPDPDAEVV SLSPRTLLEA ERYVCEICNQ 60 GFQRDQNLQM HRRRHKVPWK LLKREAAAVR KRVFVCPEPS CLHHDPRHAL GDLVGIKKHF 120 RRKHSNHKQW VCSKCSKAYA VQSDYKAHLK TCGTRGHSCD CGRVFSRFGF FGLSMLSVGC 180 EFRLIILLLL HTPPNTSCAH EADDDDDVNV CHTIQCQLLY SRIQSSSSHN LLLCNAVESF 240 IEHQDSCNGA GGLSWTASST TPSAATNASA PAPNDHHRLG LLHNLELQLL PTSNTLQSHA 300 TSSPTSSLTL EFANARRIRQ QAQADLQNAY LLRDHARKQM NLLLLQMTCH ACRKQFQPKP 360 DSAFAEVSPP SASCVSSLMT GIKRDDINVG HHLPKFWST

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MLSSPQKTPP HTSISCLEDG SSSKRKRRPA GTPDPDAEVV SLSPRTLLEA ERYVCEICNQ  60
GFQRDQNLQM HRRRHKVPWK LLKREAAAVR KRVFVCPEPS CLHHDPRHAL GDLVGIKKHF  120
RRKHSNHKQW VCSKCSKAYA VQSDYKAHLK TCGTRGHSCD CGRVFSRFGF FGLSMLSVGC  180
EFRLIILLLL HTPPNTSCAH EADDDDDVNV CHTIQCQLLY SRIQSSSSHN LLLCNAVESF  240
IEHQDSCNGA GGLSWTASST TPSAATNASA PAPNDHHRLG LLHNLELQLL PTSNTLQSHA  300
TSSPTSSLTL EFANARRIRQ QAQADLQNAY LLRDHARKQM NLLLLQMTCH ACRKQFQPKP  360
DSAFAEVSPP SASCVSSLMT GIKRDDINVG HHLPKFWST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-13	126	167	3	44	Zinc finger protein JACKDAW
5b3h_F	1e-13	126	167	3	44	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT833680	1e-136	CT833680.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA234B05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008798170.1	1e-121	protein SHOOT GRAVITROPISM 5-like
Swissprot	Q9C9X7	3e-96	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	M0RJ52	0.0	M0RJ52_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P17770_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1051	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	2e-96	C2H2-like zinc finger protein

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]