PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P16000_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 369aa    MW: 42048.1 Da    PI: 6.8504
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P16000_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0001981103323
                             ET..TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                             C+   Cgk+F +   Lk+H   H
  GSMUA_Achr10P16000_001  81 CSyeGCGKTFIDAGALKKHAHIH 103
                             77779**************9877 PP
2zf-C2H214.97.4e-05108132123
                             EEET..TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                             ++C+   Cgk F ++s LkrH   H
  GSMUA_Achr10P16000_001 108 HVCQyeGCGKKFLDSSKLKRHYLIH 132
                             789999***************9988 PP
3zf-C2H220.71.1e-06138162123
                             EEET..TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                             + Cp   Cgk Fs   nL+ H++tH
  GSMUA_Achr10P16000_001 138 FICPyeGCGKAFSLDFNLRAHMKTH 162
                             78**********************9 PP
4zf-C2H216.52.5e-05168192123
                             EEET..TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                             ++Cp   Cgk++ + s L++H +tH
  GSMUA_Achr10P16000_001 168 HVCPypECGKRYINESKLRTHVKTH 192
                             79**********************6 PP
5zf-C2H213.20.00027230255123
                             EEET..TTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                             y Cp   C k + + + L+ H+r+ H
  GSMUA_Achr10P16000_001 230 YACPyeGCEKAYIHEYKLNLHLRKeH 255
                             89**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.3E-1375105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003479103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.03279108IPR007087Zinc finger, C2H2
PROSITE patternPS00028081103IPR007087Zinc finger, C2H2
SuperFamilySSF576672.04E-882132No hitNo description
Gene3DG3DSA:3.30.160.604.1E-13106128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0038108132IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.526108137IPR007087Zinc finger, C2H2
PROSITE patternPS000280110132IPR007087Zinc finger, C2H2
SuperFamilySSF576672.72E-14119172No hitNo description
Gene3DG3DSA:3.30.160.602.5E-20129165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.092138167IPR007087Zinc finger, C2H2
SMARTSM003554.7E-4138162IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280140162IPR007087Zinc finger, C2H2
SMARTSM003550.0038168192IPR015880Zinc finger, C2H2-like
PfamPF138948.3E-4168193No hitNo description
PROSITE profilePS5015710.803168197IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-9168194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.43E-5168193No hitNo description
PROSITE patternPS000280170193IPR007087Zinc finger, C2H2
SuperFamilySSF576672.25E-5225253No hitNo description
Gene3DG3DSA:3.30.160.603.5E-9225253IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0092230255IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.118230260IPR007087Zinc finger, C2H2
PROSITE patternPS000280232255IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEFPMDHYPA AEKRPAARDR RTTAVRWFKE WVPQDVVATG GKCLLLKWVT EDKLKALKEK  60
SKETESEDQK PEPATEVLFL CSYEGCGKTF IDAGALKKHA HIHGEKQHVC QYEGCGKKFL  120
DSSKLKRHYL IHTGERDFIC PYEGCGKAFS LDFNLRAHMK THSQDNYHVC PYPECGKRYI  180
NESKLRTHVK THHEKSTMVD MVKHATPVEK PHTSKATAAA YGSASAERPY ACPYEGCEKA  240
YIHEYKLNLH LRKEHPGHNS EENGKPAPVV GHGLEEASDQ EVYITKGGIG KNSKRSKPNV  300
APQMPRAKIT NRKGNLVPTN MPAVKKQWAS KEMYEEDSEE TEEEDRDNAE EDGWRYQANG  360
DDEETEEEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C2e-36811928119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009379848.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like isoform X1
SwissprotQ2V3L31e-124YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLM0RIM50.0M0RIM5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P16000_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-122C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]