PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P15430_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Trihelix | ||||||||
Protein Properties | Length: 520aa MW: 56387.5 Da PI: 6.3958 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 30.6 | 8.7e-10 | 191 | 253 | 1 | 59 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnk 59 +Wt+ + L++a++e+ e+l+r++ ++ +We+v+ + ++++ +s++qC++k +nl+k GSMUA_Achr10P15430_001 191 EWTDTAIGSLLDAYTEKYEQLNRRNPRGRDWEDVATIVsercNKQKVCKSAEQCNNKNDNLKK 253 5********************************987776655999999*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.2E-11 | 189 | 253 | No hit | No description |
Gene3D | G3DSA:3.40.1160.10 | 2.2E-17 | 234 | 312 | IPR001048 | Aspartate/glutamate/uridylate kinase |
SuperFamily | SSF53633 | 7.27E-33 | 251 | 308 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Pfam | PF00696 | 5.1E-12 | 252 | 493 | IPR001048 | Aspartate/glutamate/uridylate kinase |
SuperFamily | SSF53633 | 7.27E-33 | 363 | 508 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Gene3D | G3DSA:3.40.1160.10 | 2.2E-17 | 367 | 415 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Gene3D | G3DSA:3.40.1160.10 | 1.2E-21 | 416 | 508 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Sequence ? help Back to Top |
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Protein Sequence Length: 520 aa Download sequence Send to blast |
MVGSGQSYCE SRLGLSQHQG GSSLSAAHHY VTAKAAPIPL HHRAHHQLGA AESIASSGKK 60 GVVVNGGGGE DHEGNGEAFG QTDASKCPVA PAFDDHCFAV DDNTFADQHP AAADDDDINT 120 DNADRKGVAT SASHHQHLHH HRQPHHQSPK RKDRDDASNG EPPYCYNSSL AANKKSRPMS 180 SPGDNGKGRE EWTDTAIGSL LDAYTEKYEQ LNRRNPRGRD WEDVATIVSE RCNKQKVCKS 240 AEQCNNKNDN LKKVILKICG TALAGVGPYD VDPKVIALIA KEIAIANHSG LEVAVVIGGQ 300 NIFCGDTRIA ATGIDRATTY QMGYAFPVSM LILIFTIVKW LECCAIACWE LRVVVRLGIN 360 ILEKSTDFYL HMNYGSMLAS LMNAIMLQAS LEKLGVEVRM QSTLMMQEIA EPYISPLFST 420 DAAASLRASE IHADVVLKGT TVDSIYNCHS RNSNGSAFEH ISFRELVSRG FTAMDMTALN 480 ICEENSIPVV IFNLSEPGNV SKALYGDQTV ILIDPSGRII |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ek5_A | 1e-36 | 252 | 513 | 10 | 239 | Uridylate kinase |
3ek5_B | 1e-36 | 252 | 513 | 10 | 239 | Uridylate kinase |
3ek5_C | 1e-36 | 252 | 513 | 10 | 239 | Uridylate kinase |
3ek5_D | 1e-36 | 252 | 513 | 10 | 239 | Uridylate kinase |
3ek5_E | 1e-36 | 252 | 513 | 10 | 239 | Uridylate kinase |
3ek5_F | 1e-36 | 252 | 513 | 10 | 239 | Uridylate kinase |
3ek6_A | 1e-36 | 252 | 513 | 10 | 239 | Uridylate kinase |
3ek6_B | 1e-36 | 252 | 513 | 10 | 239 | Uridylate kinase |
3ek6_C | 1e-36 | 252 | 513 | 10 | 239 | Uridylate kinase |
3ek6_D | 1e-36 | 252 | 513 | 10 | 239 | Uridylate kinase |
3ek6_E | 1e-36 | 252 | 513 | 10 | 239 | Uridylate kinase |
3ek6_F | 1e-36 | 252 | 513 | 10 | 239 | Uridylate kinase |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009404384.1 | 1e-173 | PREDICTED: uncharacterized protein LOC103987725 isoform X1 | ||||
TrEMBL | M0RIG9 | 0.0 | M0RIG9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P15430_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1935 | 34 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.1 | 1e-73 | Trihelix family protein |