PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P15170_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 377aa    MW: 41390 Da    PI: 8.6958
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P15170_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-055878323
                            ETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                            C++Cgk F r  nL+ H r H
  GSMUA_Achr10P15170_001 58 CEICGKGFQRDQNLQLHRRGH 78
                            *******************88 PP
2zf-C2H213.20.00026132154123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             +kC +C+k++  +s+ k H +t+
  GSMUA_Achr10P15170_001 132 WKCDKCSKRYAVQSDWKAHSKTC 154
                             58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.1E-55578IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.14E-75578No hitNo description
PROSITE profilePS5015711.4895678IPR007087Zinc finger, C2H2
SMARTSM003550.0765678IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
SMARTSM0035528097127IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-4120153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.14E-7127152No hitNo description
SMARTSM00355140132152IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010150Biological Processleaf senescence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MAGEAVSKAS QPLNPSSLLS SLFDGSFSLT KLFVSTDPEA EVIALSPGTL LATNRFLCEI  60
CGKGFQRDQN LQLHRRGHNL PWKLKQRSGK EPRKRVYVCP EESCIHHNPA RALGDLTGIK  120
KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTREYR CDCGVLFSRR DSFITHRAFC  180
DALAEETARV SAAYTMTNTT SIGSVDSLLQ DGAMTPNIWK HLSPNLKPNI MDREVGQQDR  240
HGCSSWIHFN KLSSLPTSNT LKPLTGSVPS LFTSLPHRPA PDISATALLQ KAAQVGAIST  300
TPFSGSFGLP ECQNTSAGDG SVFDGLLIHE FAASNTDEVN YITRSRSMLR DCLGGETRDF  360
LGVGVQTLCQ PSANGWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-35128192367Zinc finger protein JACKDAW
5b3h_F5e-35128192367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1074681e-105AK107468.1 Oryza sativa Japonica Group cDNA clone:002-129-B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009421477.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9FFH31e-112IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLM0RIE30.0M0RIE3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P15170_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-114C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  2. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]