PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P13050_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LBD
Protein Properties Length: 158aa    MW: 17659.3 Da    PI: 7.082
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P13050_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.82.2e-4461051100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                             +Ca+Ck+lrr+C++dCv+ap fp+++p+kfa+vh++FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+
  GSMUA_Achr10P13050_001   6 PCASCKLLRRRCTPDCVFAPFFPSDEPHKFAMVHRVFGASNVSKMLQELPLHQRADAVSSLVYEANARMRDPVYGCVGAISYLQHQV 92 
                             7************************************************************************************** PP

                  DUF260  88 eqlkaelallkee 100
                             +ql+ +lal+++e
  GSMUA_Achr10P13050_001  93 SQLQMQLALAQAE 105
                             *********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.3895106IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-446103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MGSHSPCASC KLLRRRCTPD CVFAPFFPSD EPHKFAMVHR VFGASNVSKM LQELPLHQRA  60
DAVSSLVYEA NARMRDPVYG CVGAISYLQH QVSQLQMQLA LAQAEMLCIQ MQQAQLMDAD  120
GMQYLMQSDL SAVAQLTNYP SSSSNVPHEP LKRENPWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-5021077112LOB family transfactor Ramosa2.1
5ly0_B5e-5021077112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009421400.11e-115PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW32e-66LBD12_ARATH; LOB domain-containing protein 12
TrEMBLM0RHT11e-114M0RHT1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P13050_0011e-115(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88238150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.14e-58LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]