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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P12020_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | bHLH | ||||||||
Protein Properties | Length: 184aa MW: 20636.3 Da PI: 6.7895 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.7 | 1.1e-09 | 27 | 74 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +K Ka +L + ++Y++sLq GSMUA_Achr10P12020_001 27 SHSLAERVRREKISERMKVLQSLVPGC-----EKvTGKALMLDEIINYVQSLQ 74 8*************************9.....67699***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.19E-17 | 21 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.01E-11 | 21 | 78 | No hit | No description |
PROSITE profile | PS50888 | 15.618 | 23 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.6E-17 | 24 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.5E-7 | 27 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.0E-10 | 29 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MKTPKPREEI PAGCIHVRAR RGEATDSHSL AERVRREKIS ERMKVLQSLV PGCEKVTGKA 60 LMLDEIINYV QSLQNQVEFL SMKLASLSPM LYFDANSDDY MNEAERVMRS TPLQASYVGQ 120 TNHLRSVALE DGTSNYHMMG HSAHLFLQGQ GTTSFPENGS SFMGEQRRGF LSQAEDVNTC 180 SSFQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009421185.2 | 1e-135 | PREDICTED: transcription factor bHLH137-like | ||||
Swissprot | Q93W88 | 9e-45 | BH137_ARATH; Transcription factor bHLH137 | ||||
TrEMBL | M0RHH8 | 1e-136 | M0RHH8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P12020_001 | 1e-136 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2358 | 37 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 4e-47 | bHLH family protein |
Publications ? help Back to Top | |||
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