PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P10300_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bZIP
Protein Properties Length: 472aa    MW: 52039.9 Da    PI: 6.7365
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P10300_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.22.3e-10156190438
                             XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                  bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 
                              k  rr+++NReAAr+sR+RKka++++Le     L
  GSMUA_Achr10P10300_001 156 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRL 190
                             6889************************9865555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-7153223IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.094155199IPR004827Basic-leucine zipper domain
PfamPF001701.7E-7156197IPR004827Basic-leucine zipper domain
CDDcd147086.77E-22157208No hitNo description
SuperFamilySSF579596.88E-7157200No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-7158201No hitNo description
PROSITE patternPS000360160175IPR004827Basic-leucine zipper domain
PfamPF141443.2E-29243318IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MDLCCPNSDQ EGAAYFGELE KALMQGVDGI RETEEDTKGG PSSLFPFSFG SLPTLTTSTT  60
DTSWPATLEI FPSWPMRSQQ TPRVRSCLLD LGSDSTASRR ASSDQSADQE QAMMTMMIAG  120
DGSITGTTPT SQLASQEKVP KMTGSAAGKD GKKLDAKTLR RLAQNREAAR KSRLRKKAYV  180
QQLESSRIRL QQLEHDLQRA RSQGLFLGVA GSANGAVTSA FRAAGAAMFD VEYARWLDEN  240
CKHMSDLRGA MQAHLPDGNL GVIVDQCIAN YDDLFRLKEI VAKSDVFHLL NGTWMTPAER  300
CFLWMGGFRP SELLEILMPH LDPLTEQQLL VIGNLRLSSQ QAEEALSQGL EQLHRSLSDT  360
VTGDSLSDGV DVGNYMGHMA LALGKLANLE GFVRQADNLR QQTLHQLRRN LTIKQAARCF  420
LAIGEYYTRL RALSSLWASR PRQSLIVHDS VVSSATDLQI VHQPLQNHFT SF
Functional Description ? help Back to Top
Source Description
UniProtRequired for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269|PubMed:9490265}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420514.10.0PREDICTED: transcription factor TGAL5-like isoform X1
SwissprotO490671e-160LG2_MAIZE; Transcription factor LG2
TrEMBLM0RH060.0M0RH06_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P10300_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44443670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-144bZIP family protein
Publications ? help Back to Top
  1. Walsh J,Freeling M
    The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex.
    Plant J., 1999. 19(4): p. 489-95
    [PMID:10504571]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]