PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P09690_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

GRAS

Protein Properties

Length: 439aa MW: 48956.6 Da PI: 7.7816

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P09690_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	260	8.5e-80	67	436	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 l++lLl +A a++++++ +a +L l ++as +g pmqR+ ayf+ +Laar++ +s y+++ + +t+ +ee++ ++ ++ + GSMUA_Achr10P09690_001 67 LRRLLLLAASAIDADHADAAIDALVDLYQHASLHGHPMQRVMAYFADGLAARILTDSSPFYRSIMAHPTP----EEEFTGFTELYRA 149 6899**********************************************************999998....56667778899 PP GRAS 88 sPilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLak 167 sP+++f+h+taNq+I+ea+e e +r+ +iDfd+s+G+QWp+L+q+L +++ ++p sl +Tg+g+ s+eel++t+ rL GSMUA_Achr10P09690_001 150 SPCYQFAHFTANQTIVEAFEAEekqngRRLYVIDFDVSYGFQWPSLIQSLCDKAttSKPISLHLTGFGR----STEELKNTETRLVG 232 ******************9988888899*****************999866667*****....9********* PP GRAS 168 fAeel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 f +++ +++f +n l l ++++L+++++ +laVnlv+ l+++ ++s l ++L + sl+P vvv++e+e++ + + GSMUA_Achr10P09690_001 233 FSKSCsNLEFVYNGL----LRGSTTSDLKIEKNATLAVNLVFYLQTMKSSSEML-----ATLMSIHSLNPSVVVLAEKEISQRPAGY 310 9758****8....7778899*****************8444444.....46********************** PP GRAS 254 lerfle.aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 +rf+e +l+y++a+f sl+ lp++s r ++E+ lgrei+++++c+ ++ + W+ r+e+ GF+ ++ls++ ++qakl GSMUA_Achr10P09690_001 311 SARFVEsSLNYFAAMFRSLHDCLPADSLGRLSIEKNHLGREIKSAITCNCEK-------TSAWKGRMESTGFQGMKLSSRSVSQAKL 390 *846************************************8665.......899*********************** PP GRAS 340 llr.........kvksdgyrveee..sgslvlgWkdrpLvsvSaWr 374 ll+ +v++ g+ + e +l l+ +dr+L++vSaW+ GSMUA_Achr10P09690_001 391 LLKikgqfstieHVSNSGFGISETddGRTLSLCLQDRNLITVSAWK 436 982222222212334556665443255666*************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	39.164	41	405	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.0E-77	67	436	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MEGDDNVRAW RSHAIKKRKA RDGFGACHVK AKDADDGKFL VLLQAKERML REDPKRSGQE 60 DATDEQLRRL LLLAASAIDA DHADAAIDAL VDLYQHASLH GHPMQRVMAY FADGLAARIL 120 TDSSPFYRSI MAHPTPEEEF TGFTELYRAS PCYQFAHFTA NQTIVEAFEA EEKQNGRRLY 180 VIDFDVSYGF QWPSLIQSLC DKATTSKPIS LHLTGFGRST EELKNTETRL VGFSKSCSNL 240 EFVYNGLLRG STTSDLKIEK NATLAVNLVF YLQTMKSSSE MLATLMSIHS LNPSVVVLAE 300 KEISQRPAGY SARFVESSLN YFAAMFRSLH DCLPADSLGR LSIEKNHLGR EIKSAITCNC 360 EKTSAWKGRM ESTGFQGMKL SSRSVSQAKL LLKIKGQFST IEHVSNSGFG ISETDDGRTL 420 SLCLQDRNLI TVSAWKCTR

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MEGDDNVRAW RSHAIKKRKA RDGFGACHVK AKDADDGKFL VLLQAKERML REDPKRSGQE  60
DATDEQLRRL LLLAASAIDA DHADAAIDAL VDLYQHASLH GHPMQRVMAY FADGLAARIL  120
TDSSPFYRSI MAHPTPEEEF TGFTELYRAS PCYQFAHFTA NQTIVEAFEA EEKQNGRRLY  180
VIDFDVSYGF QWPSLIQSLC DKATTSKPIS LHLTGFGRST EELKNTETRL VGFSKSCSNL  240
EFVYNGLLRG STTSDLKIEK NATLAVNLVF YLQTMKSSSE MLATLMSIHS LNPSVVVLAE  300
KEISQRPAGY SARFVESSLN YFAAMFRSLH DCLPADSLGR LSIEKNHLGR EIKSAITCNC  360
EKTSAWKGRM ESTGFQGMKL SSRSVSQAKL LLKIKGQFST IEHVSNSGFG ISETDDGRTL  420
SLCLQDRNLI TVSAWKCTR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	9e-42	75	435	27	378	Protein SCARECROW
5b3h_A	9e-42	75	435	26	377	Protein SCARECROW
5b3h_D	9e-42	75	435	26	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009420571.1	0.0	PREDICTED: scarecrow-like protein 23
TrEMBL	M0RGU5	0.0	M0RGU5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P09690_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11649	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	1e-40	GRAS family protein