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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P09150_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 23646.4 Da PI: 8.245 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.2 | 1.1e-19 | 19 | 64 | 2 | 51 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +++GVr ++ +gr++AeIrdp +k+ r++lg+fgtaeeAa+a++aa++ GSMUA_Achr10P09150_001 19 HFRGVRKRP-WGRYAAEIRDP---NKKSRIWLGTFGTAEEAARAYDAAAR 64 69*******.**********9...347*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.58E-15 | 18 | 51 | No hit | No description |
PROSITE profile | PS51032 | 19.796 | 19 | 77 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-25 | 19 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-17 | 19 | 65 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.7E-13 | 19 | 63 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-25 | 19 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MAPRGKATTV GDGEGKEAHF RGVRKRPWGR YAAEIRDPNK KSRIWLGTFG TAEEAARAYD 60 AAARDSSSQS STVENSGSSE AAAAAAMPSL PAPLPPSPDI NLVYRGQGGA RFPFQPYSPV 120 IQAAQPFFFL NTVARSENFP TSDASMTAYH RQLPLCQPTI IACWHPPPAV TVAAVTATQS 180 DSDSSSVVDR HPDHRSPPSP SASPKSFALH LDLNLPPPLD TA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-16 | 11 | 73 | 5 | 69 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009420618.1 | 4e-96 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
TrEMBL | M0RGP1 | 1e-160 | M0RGP1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P09150_001 | 1e-161 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 2e-18 | erf domain protein 9 |