PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P06700_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 23825 Da PI: 6.0111 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.7 | 3.9e-38 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C aCk+lrrkC+++Cv+apyf +eq +++fa+vhk+FGasn +kll +lp +r++a+ ++ yeA+ar++dP+yG+v++i++lqqq GSMUA_Achr10P06700_001 7 PCGACKFLRRKCVRGCVFAPYFSHEQaAAHFAAVHKVFGASNASKLLMHLPVADRSEAALTISYEAQARLQDPIYGCVAHIFALQQQ 93 7***********************9978*********************************************************** PP DUF260 87 leqlkaelallkee 100 + +l+a+la+lk++ GSMUA_Achr10P06700_001 94 VVTLEAQLASLKAQ 107 *********99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.234 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.4E-37 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MAGLGSPCGA CKFLRRKCVR GCVFAPYFSH EQAAAHFAAV HKVFGASNAS KLLMHLPVAD 60 RSEAALTISY EAQARLQDPI YGCVAHIFAL QQQVVTLEAQ LASLKAQTAQ GFVSGYSSIP 120 RLEEDRYGNK LPPYRPGESL PLMPQPLAAD APVNPEAMLC QDNELVDSNS FQSSQLELVD 180 DNSSCAMASL DLEAYTWRSA HHHDMEDLHS VAFGRLNCA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-34 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-34 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009420450.1 | 1e-162 | PREDICTED: LOB domain-containing protein 29-like | ||||
Swissprot | Q5UG13 | 4e-66 | LBD_ORYSJ; LOB domain-containing protein CRL1 | ||||
TrEMBL | M0RFZ7 | 1e-161 | M0RFZ7_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P06700_001 | 1e-162 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2501 | 38 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 4e-50 | lateral organ boundaries-domain 29 |
Publications ? help Back to Top | |||
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