PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P06370_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRF
Protein Properties Length: 337aa    MW: 36917.9 Da    PI: 8.829
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P06370_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC771.9e-2467111145
                     WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                             d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  GSMUA_Achr10P06370_001  67 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMHRGRNRSRKPVES 111
                             79****************************************986 PP
2QLQ68.61.4e-23641237
                     QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                            +FTaaQ+q+L++Q+l+yKyL+a++PvPpeL+ +iq+
  GSMUA_Achr10P06370_001  6 PFTAAQWQELEHQALIYKYLMAGVPVPPELVIPIQR 41
                            9*********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.7E-15541IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.4E-18640IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166625.304641IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.83167111IPR014977WRC domain
PfamPF088796.1E-2168110IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGGRAPFTAA QWQELEHQAL IYKYLMAGVP VPPELVIPIQ RSFEALAGRY YHHPALAYCS  60
YYGKKLDPEP GRCRRTDGKK WRCSKDAHPD SKYCERHMHR GRNRSRKPVE SQSASQMQSS  120
SSTVTSIAPA GSGGGGNGGG SFQSIPQLSV AGHSNTQQSL CLGTSSSSQL PLGPGPFGNR  180
YFCGVKPGAD EHNFFSETSG STRHLGMDSI DGSWRLMPSQ VSSFPPSEAR GPSLLQSACP  240
PPQSVQDLGQ VSFSSISKQQ QQHSFVGSKF DSPQPAKHES QFLRPFFDEW PKTRDSWSDL  300
EEDRSNRASY STTQLSISFP MASSDFSTSS SRSPKHD
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3159002e-53AJ315900.1 Oryza sativa DNA, clone F10 (C3).
GenBankCP0126142e-53CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420425.10.0PREDICTED: growth-regulating factor 5-like
SwissprotQ6AWY42e-99GRF5_ORYSJ; Growth-regulating factor 5
TrEMBLM0RFW40.0M0RFW4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P06370_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24633476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-47growth-regulating factor 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]