PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P05890_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Dof | ||||||||
Protein Properties | Length: 285aa MW: 30378.7 Da PI: 7.2599 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.8 | 1.4e-39 | 27 | 86 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+alkcprC stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s GSMUA_Achr10P05890_001 27 PEQALKCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTQGGSLRNVPVGGGCRKNKRS 86 6899******************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-25 | 25 | 80 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.5E-33 | 29 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.255 | 31 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 33 | 69 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MASHQLEGLL SCPKNQQQQE RKPRPHPEQA LKCPRCASTN TKFCYYNNYS LSQPRYFCKG 60 CRRYWTQGGS LRNVPVGGGC RKNKRSFSSS SSRKAQDQDL ITATNSFNPL PSPTFIPPLS 120 SDLTLAFAGL HKQPPNHGHS LLLGHPNNES LPAVTTNHGF LDILRSDSID SINPSGLDNY 180 LYYGFGVSGN VEVGGGANGE DDGFLSFHGG LGGATATAAA SQGSCKDMDE GETKVLMGGD 240 GNLAVDSGRE WTAMGSSWHG LINSSLMSGA GIDVSSTLGD AHAFF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009420350.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.3-like isoform X1 | ||||
TrEMBL | M0RFR6 | 0.0 | M0RFR6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P05890_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4704 | 32 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 9e-34 | TARGET OF MONOPTEROS 6 |