PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P05690_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 387aa    MW: 42795.7 Da    PI: 9.1299
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P05690_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.27.9e-102147127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                            ++++ C +++rtG C++G +C+++H+p
  GSMUA_Achr10P05690_001 21 PGEPDCTYYLRTGLCRFGMTCRYNHPP 47
                            5789*********************97 PP
2zf-CCCH39.11.2e-126892327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                            +++C++++rtGtCk+G++CkF+H++
  GSMUA_Achr10P05690_001 68 QPECQYYLRTGTCKFGATCKFHHPR 92
                            799********************96 PP
3zf-CCCH35.81.3e-11115138427
                             ---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                              +C +++r+G Ck+G++CkF+H++
  GSMUA_Achr10P05690_001 115 TECAYYMRNGVCKFGSTCKFHHPQ 138
                             58********************97 PP
4zf-CCCH41.52.2e-13272297227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                             ++++C+f+++tG Ck+G+ CkF+H++
  GSMUA_Achr10P05690_001 272 DQPECQFYMKTGDCKFGAACKFHHPR 297
                             689*********************96 PP
5zf-CCCH37.44.2e-12317343127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                             ++++lC f++r+G+Ck+G+ CkF H++
  GSMUA_Achr10P05690_001 317 PGEPLCIFYSRYGICKFGPHCKFDHPM 343
                             589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4182048IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-52047IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-72247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-52548IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3386593IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-66592IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-106892IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-66994IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-57192IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-7110139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.033111139IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-5111138IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9115138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4117137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666270298IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5270297IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10272297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6273300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-6276300IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6316343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.68316344IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9318343IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5319343IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MWQMSLREIE SMESGPYPER PGEPDCTYYL RTGLCRFGMT CRYNHPPNRQ MAIAAARIKG  60
GFPERVGQPE CQYYLRTGTC KFGATCKFHH PRDKAGIAGR VQLNALGYPI RLNETECAYY  120
MRNGVCKFGS TCKFHHPQPS NTMANVRGST MYPGVHSPTS SQQSYHGGLT PLSRPSFIPS  180
PRWQGLSSYA QVIVPQGLVQ VPSWNTYSGQ LGSVSSSESQ LHLPRTTQFY GTSRQNETIA  240
GVQGTIPSYR SSAIPLGQYV LARENVFPER PDQPECQFYM KTGDCKFGAA CKFHHPRERL  300
LPPPNCLLSP LGLPLRPGEP LCIFYSRYGI CKFGPHCKFD HPMATPIGVY AYSLPTSSSA  360
DALVSRNLLV SSSSGPPSLE AATGKSR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420318.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_009420319.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLM0RFP60.0M0RFP6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P05690_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-138zinc finger protein 1