PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P03230_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 442aa    MW: 48745.4 Da    PI: 6.1969
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P03230_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.4e-17131180155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  GSMUA_Achr10P03230_001 131 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 180
                             78*******************......55************************997 PP
2AP2422.3e-13223273155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ k +g
  GSMUA_Achr10P03230_001 223 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDKAAIKCNG 273
                             89********.7******...5...334336**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.17E-16131189IPR016177DNA-binding domain
PfamPF008474.9E-9131180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-17132189IPR001471AP2/ERF domain
CDDcd000181.30E-11132190No hitNo description
SMARTSM003801.3E-32132194IPR001471AP2/ERF domain
PROSITE profilePS5103217.794132188IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-17223282IPR016177DNA-binding domain
CDDcd000183.86E-26223283No hitNo description
PfamPF008475.1E-9223273IPR001471AP2/ERF domain
PROSITE profilePS5103215.396224281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-16224281IPR001471AP2/ERF domain
SMARTSM003802.3E-32224287IPR001471AP2/ERF domain
PRINTSPR003674.2E-6225236IPR001471AP2/ERF domain
PRINTSPR003674.2E-6263283IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MLDLNVASSA ESTAVAEKAI GEYTGVVGSE TSESSVLNVE TSTSAAADED SCSTLPVTAP  60
AFEFGILKRS ASAEGENDVD EEIEEDGNDV SQESGLITRQ LFPPQPVPQP FPQPQQQQAK  120
KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG  180
VDADINFNLS DYEEDLKQMS NLTKEEFVHI LRRQSTGFSR GSSKYRGVTL HKCGRWEARM  240
GQLLGKKYIY LGLFDSEIEA ARAYDKAAIK CNGREAVTNF DPSTYEGQLF TGADSEGHNV  300
DLNLRICQPV VHSPKKDQNL PGILFPFGSF EASALVKVNN PPPQPILVRH DIDMPNESSH  360
AWTAQRLSYY STNEERAREK KPMMGVQALP SWAWQMQCPT PLPLFSSAAS SGFSIASTTT  420
AAIPPLKPHS SWPSPFPPTS HI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420032.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotB8AXC31e-125AP21_ORYSI; APETALA2-like protein 1
TrEMBLM0RF000.0M0RF00_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P03230_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.33e-98related to AP2.7