PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P02390_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | C2H2 | ||||||||
Protein Properties | Length: 250aa MW: 27853.1 Da PI: 7.7977 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00017 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H GSMUA_Achr10P02390_001 60 YSCSFCRREFRSAQALGGHMNVH 82 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.94E-6 | 57 | 87 | No hit | No description |
PROSITE profile | PS50157 | 11.219 | 60 | 87 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0098 | 60 | 82 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MEQARCWMWA RANYSSRPHL STQIHRLLFG SSYNQSWEEK AFAEDAAGHL GGCVWPPRSY 60 SCSFCRREFR SAQALGGHMN VHRRDRARLR QCSSVGGEAG EDQQHPNPCL MVAMASEHPP 120 QVNPNPNSGV PASSVPPRVP AAATKGNWTE DAVFSPSFSS SRAGSMEHST PLHLVLGPQL 180 KLGVENLGSK KACEDEEQNR NKRRRTETTP VFFMKSFSCD QQRVQPEALN HDTVEELDLE 240 LRLGDAPKVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-12 | 55 | 82 | 2 | 29 | superman protein |
2l1o_A | 1e-12 | 55 | 82 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009419925.1 | 0.0 | PREDICTED: transcriptional regulator SUPERMAN | ||||
TrEMBL | M0RER6 | 0.0 | M0RER6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P02390_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9594 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 1e-26 | C2H2 family protein |