PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00158442001 | ||||||||
Common Name | GSBRNA2T00158442001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 271aa MW: 30740.2 Da PI: 5.4062 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.4 | 7.2e-36 | 61 | 153 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k+y+++ed+++++++sws+ +nsf+v+d++ f++++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k GSBRNA2T00158442001 61 FLTKTYDLVEDSRTNHVVSWSQAKNSFIVWDPQAFSTTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDR---------WEFANEGFLRGQK 141 9****************************************************************999.........************* PP XXXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkkse 103 +ll++i+r+k++ GSBRNA2T00158442001 142 HLLKTIRRRKTN 153 *********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 3.54E-35 | 56 | 150 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.6E-39 | 57 | 150 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.4E-59 | 57 | 150 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 9.3E-32 | 61 | 150 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.8E-19 | 61 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.8E-19 | 99 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 100 | 124 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.8E-19 | 112 | 124 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MDPSYRFIKE EFPTGFIVSP SPPSSSTYSY LYSTSMVPND PTTSSSPQPI EGLHESGPPP 60 FLTKTYDLVE DSRTNHVVSW SQAKNSFIVW DPQAFSTTLL PRFFKHNNFS SFVRQLNTYG 120 FRKVNPDRWE FANEGFLRGQ KHLLKTIRRR KTNNCCIEVG RRDKQNPDFL QQLMEHKDKS 180 KDMEEAIRKK RQRTIDQGTS DVVNVEDCDV NVGGGSSSRF VDMKQDIYGD MTEFDMSELD 240 GLAMDIEGLG GQFTGEEVLD QLGYLGSSSH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-24 | 52 | 152 | 17 | 131 | Heat shock factor protein 1 |
5d5v_B | 1e-24 | 52 | 152 | 17 | 131 | Heat shock factor protein 1 |
5d5v_D | 1e-24 | 52 | 152 | 17 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 176 | 189 | KDKSKDMEEAIRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00158442001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189327 | 1e-146 | AC189327.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB037A01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013623226.1 | 1e-147 | PREDICTED: heat stress transcription factor A-6b-like | ||||
Refseq | XP_013739498.2 | 1e-147 | heat stress transcription factor A-6b-like | ||||
Swissprot | Q9LUH8 | 1e-110 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A398A8T7 | 1e-146 | A0A398A8T7_BRACM; Uncharacterized protein | ||||
STRING | Bo3g081420.1 | 1e-146 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1256 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-108 | heat shock transcription factor A6B |
Publications ? help Back to Top | |||
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