PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GATA

Protein Properties

Length: 208aa MW: 22588.9 Da PI: 5.1468

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00158366001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	63.9	1.9e-20	130	164	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ kTp+WR gp+g+ktLCnaCG++y++ +l GSBRNA2T00158366001 130 CQHCGADKTPQWRAGPSGPKTLCNACGVRYKSGRL 164 *******************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	2.9E-17	124	174	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.912	124	160	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	7.6E-16	125	187	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.5E-15	128	162	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	8.97E-17	129	178	No hit	No description
Pfam	PF00320	5.1E-18	130	164	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	130	155	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MESFMEELLN FSVPEEEGGA VVRSPKNIAR RKTGLRQTES FGLLNPDDEL GEVEEEDLEW 60 ISNKDAFPVI ETFVGVLPSE HFSVSSPERE ATEGKQLSPV SVLETSSQNI SITTTTTTSN 120 NSSGGSNRSC QHCGADKTPQ WRAGPSGPKT LCNACGVRYK SGRLVPEYRP ANSPTFSPEF 180 HSNSHRKIVE MRKHVVSSDG GGRQDCG*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in stems, flowers and leaves. {ECO:0000269\|PubMed:12139008}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269\|PubMed:12139008}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00377	DAP	Transfer from AT3G24050	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00158366001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010466791.1	4e-93	PREDICTED: GATA transcription factor 1-like isoform X1
Swissprot	Q8LAU9	2e-44	GATA1_ARATH; GATA transcription factor 1
TrEMBL	A0A3P6ADJ5	3e-65	A0A3P6ADJ5_BRACM; Uncharacterized protein
TrEMBL	A0A3P6B1Q1	4e-65	A0A3P6B1Q1_BRAOL; Uncharacterized protein
STRING	XP_010466791.1	2e-92	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12987	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24050.1	5e-46	GATA transcription factor 1

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]