PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00157444001
Common NameGSBRNA2T00157444001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 515aa    MW: 56382.4 Da    PI: 6.4642
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00157444001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52.1e-31164221260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y  +Hnh+k
  GSBRNA2T00157444001 164 DDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEVKKKVERSR-EGHITEIIYAKTHNHPK 221
                          8****************************************.***************85 PP
2WRKY99.61.9e-31340397259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK+vkg+++prsYY+Ct +gC v+k+ver+++d + v +tY g+H+he
  GSBRNA2T00157444001 340 EDGYRWRKYGQKVVKGNPNPRSYYKCTATGCIVTKHVERASDDLTSVLTTYIGKHTHE 397
                          8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-28157222IPR003657WRKY domain
PROSITE profilePS5081123.422158222IPR003657WRKY domain
SuperFamilySSF1182901.96E-25161222IPR003657WRKY domain
SMARTSM007744.0E-33163221IPR003657WRKY domain
PfamPF031063.8E-24164220IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.3E-33324399IPR003657WRKY domain
SuperFamilySSF1182901.02E-27331399IPR003657WRKY domain
PROSITE profilePS5081133.947334399IPR003657WRKY domain
SMARTSM007741.3E-35339398IPR003657WRKY domain
PfamPF031066.1E-24340397IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MTGFSDNFAV MGEWVDCSIN HKKRSKAELD RETFLEEDVE NKDLLQTSFQ ERSSYSGGGL  60
SERIAARAGF NIPNINIESN LWSLNISSPG VSPATLLESP VFLSNPLLSP TTGKLSSLPS  120
DHKAKDEFFD PTLIGLEHDD SQPHERTHDS GSRNSMASSG APADDGYNWR KYGQKLVKGS  180
EYPRSYYKCT HPNCEVKKKV ERSREGHITE IIYAKTHNHP KPPLNRRSGI GSSGTCNDMQ  240
IGGTEQQESF AGTNENIEWT SPVRNYGSMQ VQSGTQFGYG DAAFFNDEED RTSHMSVSMG  300
YDGEADESEP KRRKLEACAA RGTRAPKVVV KTTTDVDILE DGYRWRKYGQ KVVKGNPNPR  360
SYYKCTATGC IVTKHVERAS DDLTSVLTTY IGKHTHEVPA ARNSSSHMSS GSSGTIQGGL  420
PTQTQNYHVH YPEPHSRSEG LVTANSSLYD FQPSMRPPWA GFSVYGGETE LLGLSISGLA  480
IGQERFSMPA TGDPAGLMLQ LPAVGTNTSS LPQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-29164400878Probable WRKY transcription factor 4
2lex_A1e-29164400878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00157444001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618888.10.0PREDICTED: probable WRKY transcription factor 34
SwissprotO655900.0WRK34_ARATH; Probable WRKY transcription factor 34
TrEMBLA0A3N6QWZ40.0A0A3N6QWZ4_BRACR; Uncharacterized protein
STRINGBo1g045230.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141811524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.10.0WRKY DNA-binding protein 34
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Hu X, et al.
    Proteasome-mediated degradation of FRIGIDA modulates flowering time in Arabidopsis during vernalization.
    Plant Cell, 2014. 26(12): p. 4763-81
    [PMID:25538183]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]