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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00157137001 | ||||||||
Common Name | GSBRNA2T00157137001, LOC106434688 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 300aa MW: 33457.1 Da PI: 5.8078 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.5 | 1.8e-30 | 132 | 189 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ver+ ++p+ ++itY++eHnhe GSBRNA2T00157137001 132 DAWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERNPQNPEKFTITYTNEHNHE 189 99************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.3E-31 | 116 | 191 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.294 | 125 | 191 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-25 | 126 | 191 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.5E-35 | 130 | 190 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-25 | 132 | 189 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MGEVVYMDEG DLEAIVRGYS GSGESSGGSY LPFEAASFYE PEMETTGLDE LGELYKPFYP 60 FSTQTILTSS VSVPEDSRSF RDDKEQRRHG CLLSNGSRVD HVRITESKSK KSKKNQQKRV 120 VEQVKEENLL LDAWAWRKYG QKPIKGSPYP RSYYRCSSSK GCLARKQVER NPQNPEKFTI 180 TYTNEHNHEL PTRRNSLAGS TRAKSSQPKP SITKKSGKQV VSSPTSNPVI TSPDESSVAV 240 QDMGISEMST YQATEEIEGM STSLPSDLLS GIGNFPSFTG DFDELLNSQE FLNGYLWNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-20 | 121 | 191 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-20 | 121 | 191 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 22, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00157137001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced 30 minutes after flagellin treatment. {ECO:0000269|PubMed:11875555}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC246576 | 0.0 | KC246576.1 Brassica napus WRKY transcription factor 29.2 (WRKY29.2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013731002.1 | 0.0 | probable WRKY transcription factor 29 | ||||
Swissprot | Q9SUS1 | 1e-178 | WRK29_ARATH; Probable WRKY transcription factor 29 | ||||
TrEMBL | A0A0D3DFN8 | 0.0 | A0A0D3DFN8_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g108870.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6090 | 25 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23550.1 | 1e-160 | WRKY family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106434688 |