PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00156390001 | ||||||||
Common Name | GSBRNA2T00156390001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 627aa MW: 70471.2 Da PI: 8.494 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.2 | 8.9e-06 | 228 | 248 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++Cr+fa C+ G +C+F+H GSBRNA2T00156390001 228 VPCRYFAL-RNCRNGTSCRFSH 248 69**9999.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.549 | 224 | 251 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 627 aa Download sequence Send to blast |
MSSSGRKRVS KWDAKQEDTE NGNDYVEKSG SYYHDKDPEH AGFYPEGNGR NGSSRRSVPD 60 DDDDGERLKS RQQHQGEAWP SRGRVSHEEG DDAMMSYYDT RKSSEQDETR QPYWDRPRTR 120 RSGSRSNSRS MSRSRSRSPL QRVRRDARGS YDRHKTRDND GRYSRAGDYN DRDTKYYTED 180 SREQYPLRRS DYPEDHSNSR REASDPILRS HRDRRDVPER EYNRVSNVPC RYFALRNCRN 240 GTSCRFSHHG ARKSPERKPQ DQMFSSGTTE RMRNSHRWNE RSDTGKSCEG AKGNNNNNNG 300 SWIGDMEMSP DWNYGVKTLK NPLKEEHGVV KDTLAPAISH SHHGFSNNII ANSAPPVQVF 360 NQKIENHSAV PYQSTPLAVG GSQVLPPPPP PAVTTHLPES GIAQNTVSRE ELNHISNISA 420 SLAQFFGNGQ PIPQLQSTLN PKETMQVPEV YGKEEQSSLA QSDLLSNNSI LTGVVPAVQI 480 LNSDTLISLA GNPKASEEEA SKEPDVRKTE QGGGETTGKD VEEEEEEEDG AGDENSKKEK 540 DPKGMKAFKF ALVEIVKELL KPAWKEGGMN KDAYKNIVKK AVDKVTGAIQ TGNIPQTQEK 600 IDHYLSASKP KLTKLVQAYI SKVKKS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.14262 | 1e-153 | leaf| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00156390001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009147935.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 38-like | ||||
TrEMBL | A0A3P5YVM4 | 0.0 | A0A3P5YVM4_BRACM; Uncharacterized protein | ||||
STRING | Bra018759.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9160 | 12 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 1e-17 | C3H family protein |
Publications ? help Back to Top | |||
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